RetrogeneDB ID: retro_ogar_107

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873572.1:3777424..3777730(+)
• Located in intron of: ENSOGAG00000032262

Retrocopy information

• Ensembl ID: ENSOGAG00000024373
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000000144
• Aliases: None
• Description: None

Sequence

>retro_ogar_107
ATGGCAGACAAAGAGAAGAAGAAAGAAAGCATTCTGGACTTGTCAAAGTACATCGACAAGACTATCAACGTGAAGTTCCA
GGGAGGCCGCGAAGCCAGTGGAATCCTGAAAAGGTTCGATCCACTCCTCAACCTTGTGCTCGATGGGACCATTGAATACA
TCAGAGATCCTGATGACCAGTACAAGCTCACGGAGGACACATGCCAGTTGGGCCAGGTGGTGTACAAGGGCACATCTGTG
GTGCTCATCTGCCCGCAGGACAGCATGGAGGCCATTCTCAACCCCTTTGTCCAGCAGCATGATGCC

Alignment

ORF - retro_ogar_107 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.1 %
• Parental protein coverage: 99.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLG
          DKE.KKKESILDLSKYIDKTI.VKFQGGREASGILK.FDPLLNLVLDGTIEY.RDPDDQYKLTEDT.QLG
Retrocopy DKE-KKKESILDLSKYIDKTINVKFQGGREASGILKRFDPLLNLVLDGTIEYIRDPDDQYKLTEDTCQLG

Parental  LVVCRGTSVVLICPQDGMEAIPNPFVQQHDA
          .VV..GTSVVLICPQD.MEAI.NPFVQQHDA
Retrocopy QVVYKGTSVVLICPQDSMEAILNPFVQQHDA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_107 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013097	1 retrocopy	retro_mluc_331,
Mus musculus	ENSMUSG00000035215	1 retrocopy	retro_mmus_160,
Otolemur garnettii	ENSOGAG00000000144	3 retrocopies	retro_ogar_107 , retro_ogar_2736, retro_ogar_2867,
Rattus norvegicus	ENSRNOG00000019552	1 retrocopy	retro_rnor_1403,