RetrogeneDB ID: retro_nleu_2557

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397371.1:3491613..3492585(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000019052
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: KAT7
• Ensembl ID: ENSNLEG00000003201
• Aliases: None
• Description: None

Sequence

>retro_nleu_2557
CAGACCTATGGGAATACACGGGAACCTCTTTTAGAAAACCTGACAAGCGAGTATGACTTGGATCTTTTCCAAAGAGCACA
AGCCCGGGCTTCAGAGGATTTGGAGAAGTTAAGGCTGCAAGGCCAAATCACAGAGGGAAGCAACATGATTAAAGCAATTG
CTTTTGGCCTCTATGACCTTGATACCTGGTATCATTCTCCATATCCTGAAGAATATGCACGGCTGGGATGTCTCTATATG
TGTGAATTCTGCTTAAAATATATGAAGAGCCAAACGATACTCCACCGGCACATGGCCAAATGTGTGTGGAAACACCCACC
TTGTGATGAGATATATCGCAAAGGTTCAATCTCTGTGTTTGAAGTAGATGGCAAGAAAAACAAGATCTACTGCCAAAACC
TGTGTCTGTTGGCCAAACTTTTTCTGGACCACAAGACATTACATTATGATGTGGAGCCCTTCCTGCTCTATGTTATGACA
GAGGCGGACAATACTGGCTGTCACCTGACTGGATGTTTTTCCAAGGAAAAGAATTCATTCCTCAACTGCAACATATCCTG
TATCCTTACTATGCCTCAGTACATGAGACAGGGCTATGGCAAGATGCTTATTGATTTCAGTTATTTGCTTTCCAAAGTTG
AAGAAAAAGTTGGCTCCCCAGAACATCCATTCTTAGATCTGGGGCTTATAAGCTATCGCAGTTACTGGAAAGAAGTACTT
CTCCGCTACCTGCATAATTTCCAAGGCAAAGAGATTTCTATCAAAGAAATCAGCCAGGAGACGGCTATGAATGCTGTGGA
CATTGTCAGCACTCTGCAAGCCCTTCAGATCCTCAAGTACTATAAGGGAAAACACCTAGTTTTAAAGAGACAGGACCTGA
TTGATGAGTGGATAGCCAAAGAGGCCAAAAGGTCCAACTCCAATAAAACCATGGATCCCAGCTGCTTAAAATGGACCCCT
CCCAAGGGCACT

Alignment

ORF - retro_nleu_2557 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.83 %
• Parental protein coverage: 57.55 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QTYGNTREPLLENLTSEYDLDLFRRAQARASEDLEKLRLQGQITEGSNMIKTIAFGRYELDTWYHSPYPE
          QTYGNTREPLLENLTSEYDLDLF.RAQARASEDLEKLRLQGQITEGSNMIK.IAFG.Y.LDTWYHSPYPE
Retrocopy QTYGNTREPLLENLTSEYDLDLFQRAQARASEDLEKLRLQGQITEGSNMIKAIAFGLYDLDTWYHSPYPE

Parental  EYARLGRLYMCEFCLKYMKSQTILRRHMAKCVWKHPPGDEIYRKGSISVFEVDGKKNKIYCQNLCLLAKL
          EYARLG.LYMCEFCLKYMKSQTIL.RHMAKCVWKHPP.DEIYRKGSISVFEVDGKKNKIYCQNLCLLAKL
Retrocopy EYARLGCLYMCEFCLKYMKSQTILHRHMAKCVWKHPPCDEIYRKGSISVFEVDGKKNKIYCQNLCLLAKL

Parental  FLDHKTLYYDVEPFLFYVMTEADNTGCHLIGYFSKEKNSFLNYNVSCILTMPQYMRQGYGKMLIDFSYLL
          FLDHKTL.YDVEPFL.YVMTEADNTGCHL.G.FSKEKNSFLN.N.SCILTMPQYMRQGYGKMLIDFSYLL
Retrocopy FLDHKTLHYDVEPFLLYVMTEADNTGCHLTGCFSKEKNSFLNCNISCILTMPQYMRQGYGKMLIDFSYLL

Parental  SKVEEKVGSPERPLSDLGLISYRSYWKEVLLRYLHNFQGKEISIKEISQETAVNPVDIVSTLQALQMLKY
          SKVEEKVGSPE.P..DLGLISYRSYWKEVLLRYLHNFQGKEISIKEISQETA.N.VDIVSTLQALQ.LKY
Retrocopy SKVEEKVGSPEHPFLDLGLISYRSYWKEVLLRYLHNFQGKEISIKEISQETAMNAVDIVSTLQALQILKY

Parental  WKGKHLVLKRQDLIDEWIAKEAKRSNSNKTMDPSCLKWTPPKGT
          .KGKHLVLKRQDLIDEWIAKEAKRSNSNKTMDPSCLKWTPPKGT
Retrocopy YKGKHLVLKRQDLIDEWIAKEAKRSNSNKTMDPSCLKWTPPKGT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2557 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016955	1 retrocopy	retro_cfam_1246,
Callithrix jacchus	ENSCJAG00000007037	1 retrocopy	retro_cjac_4188,
Homo sapiens	ENSG00000136504	1 retrocopy	retro_hsap_4878,
Gorilla gorilla	ENSGGOG00000007469	1 retrocopy	retro_ggor_3048,
Nomascus leucogenys	ENSNLEG00000003201	1 retrocopy	retro_nleu_2557 ,
Oryctolagus cuniculus	ENSOCUG00000000668	1 retrocopy	retro_ocun_1427,
Pongo abelii	ENSPPYG00000008925	1 retrocopy	retro_pabe_3795,
Pan troglodytes	ENSPTRG00000009383	1 retrocopy	retro_ptro_3250,
Tursiops truncatus	ENSTTRG00000000472	2 retrocopies	retro_ttru_1724, retro_ttru_1928,