RetrogeneDB ID: retro_mputfur_645

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896930.1:9294151..9294655(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WBP2
• Ensembl ID: ENSMPUG00000013775
• Aliases: None
• Description: WW domain binding protein 2 [Source:HGNC Symbol;Acc:12738]

Sequence

>retro_mputfur_645
GAGTTTGTGTTCAAGGACATGAAGAACATGCCAGAGGTCTTCAAAGGCACCAAGAGAGGCACCATCTACTATTACCTTCC
CAGTTCCACTTCTCTGTCCAAAGAAAAGATGCCATCCAATCCTTCATGATGCCATTTTATCTGATAACGGACTGCAAAAC
CAAGCGACCTGTGTTGGATGTAAACTACATCAAGAGAACAGTGAAGGTTGAAGTGGCTGGGAAAGTGACTGCTTTGTTTA
AGCAGACCTTTACACCAAGAGCCACCGCTGAGTCAGACACCAGATGCTACAGGTGAGAGCTCCATTCTCCAAAGCTGAAG
CCTCCAATGCAGCCTACAGGTACTCTCATGTGCCTCGCAGGGCCCTTGTCTTTCCCCTGCCAGTTACCAATGGAATGTAC
CCCTGTCATTCTGGCTACTTCTATCCACCACTCCATTTGACTTCTATCTAGGACCTCGTGTGATGAACATGGAATAGTTG
CAACCATGGCCACAACCTTATCCC

Alignment

ORF - retro_mputfur_645 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.41 %
• Parental protein coverage: 65.53 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ELTFNDMKNVPEAFKGTKKGTVY-LTPYRIIFLSKGRDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVK
          E..F.DMKN.PE.FKGTK.GT.Y.L.P....F.....DA.QSFMMPFYL..DC..K.PV...NYIK.TVK
Retrocopy EFVFKDMKNMPEVFKGTKRGTIY<LLPSQFHFSVQRKDAIQSFMMPFYLITDCKTKRPVLDVNYIKRTVK

Parental  AEAGGGWEGAASYKLTFTAGGAIEFGQR-MLQVASQASRGEAPNGAYGYSHMPGGAYVFPPPFANGMYPC
          .E..G.....A..K.TFT.....E...R.MLQV....S..EA.N.AY.YSH.P..A.VFP.P..NGMYPC
Retrocopy VEVAG--KVTALFKQTFTPRATAESDTR<MLQVRAPFSKAEASNAAYRYSHVPRRALVFPLPVTNGMYPC

Parental  PPGYPYPP-PPPEFYPGPPMMDGAMGYVQPPPPPYP
          ..GY.YPP..P..FY.GP..M...M...QP.P.PYP
Retrocopy HSGYFYPP<TPFDFYLGPRVMN--ME*LQPWPQPYP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_645 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_645 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004946	1 retrocopy	retro_cfam_1038,
Callithrix jacchus	ENSCJAG00000037619	1 retrocopy	retro_cjac_575,
Homo sapiens	ENSG00000132471	1 retrocopy	retro_hsap_1926,
Gorilla gorilla	ENSGGOG00000009241	2 retrocopies	retro_ggor_1404, retro_ggor_698,
Macropus eugenii	ENSMEUG00000000070	1 retrocopy	retro_meug_579,
Macaca mulatta	ENSMMUG00000009381	2 retrocopies	retro_mmul_1062, retro_mmul_854,
Monodelphis domestica	ENSMODG00000007725	3 retrocopies	retro_mdom_1410, retro_mdom_1847, retro_mdom_375,
Mustela putorius furo	ENSMPUG00000013775	1 retrocopy	retro_mputfur_645 ,
Nomascus leucogenys	ENSNLEG00000001625	1 retrocopy	retro_nleu_1214,
Ochotona princeps	ENSOPRG00000006045	2 retrocopies	retro_opri_301, retro_opri_851,
Pongo abelii	ENSPPYG00000008640	3 retrocopies	retro_pabe_693, retro_pabe_75, retro_pabe_913,
Pan troglodytes	ENSPTRG00000009660	1 retrocopy	retro_ptro_15,
Ictidomys tridecemlineatus	ENSSTOG00000021421	2 retrocopies	retro_itri_1585, retro_itri_660,