RetrogeneDB ID: retro_mputfur_1572

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897264.1:485498..485900(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COA1
• Ensembl ID: ENSMPUG00000018149
• Aliases: None
• Description: cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21868]

Sequence

>retro_mputfur_1572
TCTCTAGGAAGCAGCATGCCATTGCCTCTGGGGAAACTGGTTCTTTTTTCCAGTGTGGTGGCCAGTGGGAGCTGTGCCCT
TATACAGAAAGCTTTTTCTAGGGCTTCCTTTTACCAGCTGGCACTGGAACAGCTACACAACCACCCTGAGGTGCTGGTGG
CTTTGTATACTTCTCTCAACGTCTACTATCTCCACTTCATCAACAAGTACAACTTTGTGGACATTGCCAATGCCTAGTTG
AAGATTCCTGTCTCTGGATACAAGTCAGAGGGCCATCTCTATGTCAGCTCAGCCAGGGGTGCCCCTTTCAGAGGGTGGCA
CCTTCAGGAGGTCTTCTTTAGTGTCGAGGATGGTCAACAGTAAAGTGTGTTCAAATTCAGTGGGGACACTGATGACAAAG
TT

Alignment

ORF - retro_mputfur_1572 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.7 %
• Parental protein coverage: 93.24 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SPGSSMPWALGRMVLSSGALAAGSCALIYYLTQKAFSKASYYQLALEQLHSRPEALEALGAPLSVHHLHL
          S.GSSMP..LG..VL.S...A.GSCALI....QKAFS.AS.YQLALEQLH..PE.L.AL...L.V..LH.
Retrocopy SLGSSMPLPLGKLVLFSSVVASGSCALI----QKAFSRASFYQLALEQLHNHPEVLVALYTSLNVYYLHF

Parental  TDRDNFVDITSARLKIPVSGSKSQGLLHVHSSRDGPFQRWRLQEVFLKLQDGQQIPVFKLSENTGHEV
          ....NFVDI..A.LKIPVSG.KS.G.L.V.S.R..PF..W.LQEVF....DGQQ..VFK.S..T...V
Retrocopy INKYNFVDIANA*LKIPVSGYKSEGHLYVSSARGAPFRGWHLQEVFFSVEDGQQ*SVFKFSGDTDDKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1572 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1572 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000009377	1 retrocopy	retro_amel_1871,
Canis familiaris	ENSCAFG00000031110	1 retrocopy	retro_cfam_2115,
Callithrix jacchus	ENSCJAG00000007826	1 retrocopy	retro_cjac_656,
Homo sapiens	ENSG00000106603	1 retrocopy	retro_hsap_2595,
Gorilla gorilla	ENSGGOG00000034928	1 retrocopy	retro_ggor_1624,
Macaca mulatta	ENSMMUG00000019023	1 retrocopy	retro_mmul_653,
Mustela putorius furo	ENSMPUG00000018149	1 retrocopy	retro_mputfur_1572 ,
Nomascus leucogenys	ENSNLEG00000003316	1 retrocopy	retro_nleu_1527,
Pongo abelii	ENSPPYG00000017606	1 retrocopy	retro_pabe_1914,
Pan troglodytes	ENSPTRG00000019125	1 retrocopy	retro_ptro_1520,