RetrogeneDB ID: retro_mputfur_1224

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897045.1:4952165..4953054(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AMZ2
• Ensembl ID: ENSMPUG00000014570
• Aliases: None
• Description: archaelysin family metallopeptidase 2 [Source:HGNC Symbol;Acc:28041]

Sequence

>retro_mputfur_1224
ATGCAAATAGTAAGGCACTCTGAGCAGACACTAAACACAGCTCTCATCTCAAAAAACCCAACACTTGTGTCACAGCCTAA
GTTAGATGCTGGCAAGCGGCAATTGCTGAATGAAGCCTTCAAGCCAGACAATGACCTCTTTGGACCCATTAACTTGCATT
CACAGTCAGATTGGTTCATCTCTCATCCTGAGGCTCCCCAAGACTTTGAACAATTTTCAGTGATCCTTACGGAAAGGCAC
CCCCTCCAGAGAAATGCAGTATTTATATACAGTGCATTGGATTTCTAGGAAACATGAGAATTATCAGTGAGGAGTATACT
AAATGGCTCAAGGGTGACTGTGAAGTATCCTTCTACGGCTTGAAAGTAGAACTCCTAGAATTCATTCCTGTCTCTATCGG
GAGGTGTTCCCTTAGAGTCAATGATAACACATAAAACCTTCATATTCAAGCAGGGCACATCCCCAAGTTCTTAAAAAAGA
AGAAACCTGGAGATGCTTTCTTTATTGTGGCAATAACAATGAATGACCTTACCCAAGAGACTCCTGGAATTTTGTCTTTG
GACAGGCGTCTTTGGCAGGTGGTATGGGGATATTCAGCTTTGCCGGGTATGGCAGTGACTGCTTATAGCTCACGCTAGGA
AGACAAAGTAAACAAGCTGTAGAAAGTATCTGCAAGTGACTATTCAGTTTTTGGTAACTATTATATTCCTGACGTGATGA
GTGTTCTGCTGTTTCACTCCTCTAAGACTTTAACCCGTGAGACTGGCACATATTTGAACTTCAACCCTGCCAGTAGCTTG
CATGCCTAATGCAAGACTCCAGCCACTTGGAAGAAGCTGACTGGCACCCCCTCAACCTGTGTCTTATCTGTTTACACAAG
TTGCAGTGT

Alignment

ORF - retro_mputfur_1224 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.83 %
• Parental protein coverage: 82.78 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MQTVQHSEQTLKTALISKNPALVSQYEKLDDGERRLLNKAFKPDSDLFGPITLHSESDWIISHPEAPQDF
          MQ.V.HSEQTL.TALISKNP.LVSQ..KLD.G.R.LLN.AFKPD.DLFGPI.LHS.SDW.ISHPEAPQDF
Retrocopy MQIVRHSEQTLNTALISKNPTLVSQ-PKLDAGKRQLLNEAFKPDNDLFGPINLHSQSDWFISHPEAPQDF

Parental  EEF-FSDPSRKAPSPEKRSIYIQCIGSLGNTRIISEEYIKWLKGYCEAFFYGLTVKLLEPVPVSVTRCSF
          E.F.FSDP..KAP.PEK.SIYIQCIG.LGN.RIISEEY.KWLKG.CE..FYGL.V.LLE..PVS..RCS.
Retrocopy EQF<FSDPYGKAPPPEKCSIYIQCIGFLGNMRIISEEYTKWLKGDCEVSFYGLKVELLEFIPVSIGRCSL

Parental  RVNDNTQNLQIHAGHILRFLKKKKPRDAFCIVGITMIDL-YPRDSWNFVFGQASLTDGVGIFSFARYGSD
          RVNDNT.NL.I.AGHI..FLKKKKP.DAF.IV.ITM.DL.YPRDSWNFVFGQASL..G.GIFSFA.YGSD
Retrocopy RVNDNT*NLHIQAGHIPKFLKKKKPGDAFFIVAITMNDL<YPRDSWNFVFGQASLAGGMGIFSFAGYGSD

Parental  -FYSSHYEGKVNKLQIVSSSDYSIFDNYYIPEVTSILLLRSCKTLTHEIG-HIFGLRHCQWLACLMQGSN
          ..YSS..E.KVNKL..VS.SDYS.F.NYYIP.V.S.LL..S.KTLT.E.G.HIF.L..CQ.LACLMQ.S.
Retrocopy >AYSSR*EDKVNKL*KVSASDYSVFGNYYIPDVMSVLLFHSSKTLTRETG<HIFELQPCQ*LACLMQDSS

Parental  HLEEADRRPLNLCPICLRKLQC
          HLEEAD..PLNLC.ICL.KLQC
Retrocopy HLEEADWHPLNLCLICLHKLQC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1224 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1224 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009345	1 retrocopy	retro_btau_429,
Choloepus hoffmanni	ENSCHOG00000000493	1 retrocopy	retro_chof_2462,
Callithrix jacchus	ENSCJAG00000000254	1 retrocopy	retro_cjac_2798,
Cavia porcellus	ENSCPOG00000013061	1 retrocopy	retro_cpor_1226,
Equus caballus	ENSECAG00000011450	2 retrocopies	retro_ecab_440, retro_ecab_864,
Felis catus	ENSFCAG00000019195	1 retrocopy	retro_fcat_760,
Myotis lucifugus	ENSMLUG00000006771	2 retrocopies	retro_mluc_1540, retro_mluc_2056,
Mustela putorius furo	ENSMPUG00000014570	1 retrocopy	retro_mputfur_1224 ,