RetrogeneDB ID: retro_mputfur_116

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896916.1:7096358..7096823(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019027
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: BC048502
• Ensembl ID: ENSMPUG00000005664
• Aliases: None
• Description: cDNA sequence BC048502 [Source:MGI Symbol;Acc:MGI:2652828]

Sequence

>retro_mputfur_116
ATGGAACCCGAAGCCTTAGAAATCTGCCCTTACAACCCTCACCACCGAGTCCCACTCAGCAGATTTCAGTACCACCTGGC
TTCGTGCAGGAGGAAGAACCCCAAGAAGGCCAAAAAGATGGCCAGCTGCAAATACAATGCCTGCCACGTGGTCCCCATCA
AGAAGCTGGAGGAACACGAGGCGGCCTGCGTGAACAGAAGCTCCGTGGAGGAGGAGTTCGGCTTGCGCCCCTTGAAAGCT
AGCCTTCCAAGTTCAGAGCAGAATGGAAATGCCCTTCCAGGGCCCCCCTGGCTCCCCAGTTCTGATGTCTGGAATGTCGA
CGGCACTAATTGCCATCCCATGTTTGTCCTTAAGACTTTTGTTCCCCAAAAGCTTGTCTGTGAAAGCGATACAAGAGAGT
CAGAGAGAGAAGCCCACCCCCCGCCCCTGACCACCCCCCAGAAGACCCTCAGACCAGGAGAGTAA

Alignment

ORF - retro_mputfur_116 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.84 %
• Parental protein coverage: 98.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEPEDLEICPYDPNHRMPASRLQYHLASCRKKNPKIAKKMANCKYNACHVVPIKRLKEHEANCVNRTAVD
          MEPE.LEICPY.P.HR.P.SR.QYHLASCR.KNPK.AKKMA.CKYNACHVVPIK.L.EHEA.CVNR..V.
Retrocopy MEPEALEICPYNPHHRVPLSRFQYHLASCRRKNPKKAKKMASCKYNACHVVPIKKLEEHEAACVNRSSVE

Parental  DEPFNLP-KVISPSLEPNEKLSNAANQILDPDVWNIDNTHHSPSFVLKTFAPKTLVCESDSRDIKKQSMD
          .E....P.K...PS.E.N.............DVWN.D.T...P.FVLKTF.P..LVCESD.R........
Retrocopy EEFGLRPLKASLPSSEQNGNALPGPPWLPSSDVWNVDGTNCHPMFVLKTFVPQKLVCESDTRESEREAHP

Parental  GKHPNNYKSWRKGQ
          .......K..R.G.
Retrocopy PPLTTPQKTLRPGE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_116 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_116 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000029590	1 retrocopy	retro_acar_141,
Ailuropoda melanoleuca	ENSAMEG00000000958	1 retrocopy	retro_amel_91,
Cavia porcellus	ENSCPOG00000023851	1 retrocopy	retro_cpor_93,
Felis catus	ENSFCAG00000031316	1 retrocopy	retro_fcat_1,
Mustela putorius furo	ENSMPUG00000005664	1 retrocopy	retro_mputfur_116 ,
Mustela putorius furo	ENSMPUG00000005669	3 retrocopies	retro_mputfur_1249, retro_mputfur_155, retro_mputfur_62,
Mus musculus	ENSMUSG00000053508	1 retrocopy	retro_mmus_199,
Rattus norvegicus	ENSRNOG00000036830	1 retrocopy	retro_rnor_1938,