RetrogeneDB ID: retro_mputfur_1061

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897004.1:6871115..6871463(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CMPK1
• Ensembl ID: ENSMPUG00000012394
• Aliases: None
• Description: cytidine monophosphate (UMP-CMP) kinase 1, cytosolic [Source:HGNC Symbol;Acc:18170]

Sequence

>retro_mputfur_1061
GTGGCTGTCAATGCTCAGAAGAAACATTTCTCGATTGATGGGTTCCAAGAAATCAAGACAATCTTCAAGGTTGGAGCAAG
ACCATGGATGGAAAGGCATGGGTGTCTTTGGTTCTGTTTTTTGACTGTAATAATGAGATCTTACTGAACGATGTCTTAGA
AGGGGAAAGAGTACTTGGTAGAAGTGATGACAACAGAGAGCTTGGAAAAGAGAATTCGGACCTATCTTCAGTCGATAAAG
CCAATTATTGACTTCTACGAAGTGATGGGGAAAGCCAAGAAAATAGCTGCGTCTAAGTGTACTGATGAAGTTTTTGATGA
AGTTGTGAAGACTTCGGACAAAGAAGGC

Alignment

ORF - retro_mputfur_1061 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.5 %
• Parental protein coverage: 51.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MAANAQKNKFLIDGF-PRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI-ERCLER-GKSSGRSDDNRE
          .A.NAQK..F.IDGF.PRNQDNLQGW.KTMDGKA.VS.VLFFDCNNEI...ERCL.R.GK.........E
Retrocopy VAVNAQKKHFSIDGF<PRNQDNLQGWSKTMDGKAWVSLVLFFDCNNEILL<ERCLRR<GKEYLVEVMTTE

Parental  SLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG
          SLEKRI.TYLQS.KPIID.YE.MGK.KKI.ASK..DEVFDEVVK..DKEG
Retrocopy SLEKRIRTYLQSIKPIIDFYEVMGKAKKIAASKCTDEVFDEVVKTSDKEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1061 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1061 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004030	1 retrocopy	retro_cfam_1729,
Choloepus hoffmanni	ENSCHOG00000004014	2 retrocopies	retro_chof_609, retro_chof_840,
Cavia porcellus	ENSCPOG00000014747	4 retrocopies	retro_cpor_1070, retro_cpor_1295, retro_cpor_417, retro_cpor_799,
Macaca mulatta	ENSMMUG00000017375	2 retrocopies	retro_mmul_1572, retro_mmul_66,
Mustela putorius furo	ENSMPUG00000012394	1 retrocopy	retro_mputfur_1061 ,
Mus musculus	ENSMUSG00000028719	1 retrocopy	retro_mmus_2576,
Rattus norvegicus	ENSRNOG00000007775	1 retrocopy	retro_rnor_1940,
Sus scrofa	ENSSSCG00000003885	1 retrocopy	retro_sscr_454,