RetrogeneDB ID:

retro_mmus_268

Retrocopy
location
Organism:Mouse (Mus musculus)
Coordinates:12:101145613..101149282(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMUSG00000092054
Aliases:Kif4-ps, 4930463M05Rik, Kif4b
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Kif4
Ensembl ID:ENSMUSG00000034311
Aliases:Kif4, AI323435, D330050K22Rik, Kns4
Description:kinesin family member 4 [Source:MGI Symbol;Acc:MGI:108389]


Retrocopy-Parental alignment summary:






>retro_mmus_268
ATGAAGGAAGAGGTAAAGGGAATTCCTGTAAGGGTGGCATTGAGGTGCCGCCCTCTGGTCCCGAAAGAGATCGGTGAGGG
TTGTCAGGTGTGCCTTTCCTTTGTGCCTGGGAAGCCTCAGGTGGTGATTGGTACTGATAAATCCTTTACCTACGATTTTG
TGTTTGACCCTTCCACTGAACAGGAAGAGGTTTTCAACACAGCAGTAGCACCGCTCATTAAAGGGATATTTAACGGTTAC
AATGCCACTGTTCTGGCTTATGGACAAACTGGCTCTGGAAAAACCTACTCTATGGGAGGCGCATATAGTGCAGATCAAGA
GAATGAACCAACCATAGGGGTCATTCCTAGGGTAATACAACTTCTTTTTAAAGAAATGGAAGAAAAGAGAGACTCTGAGT
TTACACTGAGAGTGTCTTACTTGGAGATTTACAATGAAGAAATTTTGGATCTTCTATGCTCACCTTGTGAGAGAGCTTCT
CAAATACATATCCGGGAAGATCCCAAGGCAGGAATAAAGACTGTAGGACTCACTGAGAAGACGATTTCAGTTGCCTCGGA
CATGGTTTCCTGTTTGGAGCAGGGAAACAACGCCAGGACTGTAGCTGCCACAGCCATGAATTCACAGTCTTCCCGATCTC
ACGCCATCTTCACAGTTTCCATAAGGCAAAGGAAGAAGATGGACAAGAACAGCAGTTTTCACTCTAAGTTGTGTCTGGTA
GATCTTGCAGGATCAGAAAGGCAGAAGAAAACCAAGGCTGAAGGGGATCGATTGAGAGAAGGCATTAATATTAACCGAGG
ACTCCTGTGCTTGGGAAATGTAATCAGCGCTCTTGGAGATGGCAAAAAAGGCAGCTTTGTGCCCTACAGAGATTCCAAGT
TAACTCGCTTGCTTCAAGATTCTCTAGGAGGCAATAGCCACACTCTTATGATTGCCTGTGTGAGTCCTGCTGACTCCAGT
CTAGAGGAAACATTGAATACCCTACGTTATGCTGACAGAGCTAGAAAAATCAAGAACAAACCTGTTATTAATACGGATCC
CCAGACAGTTGAACTTAATCAGCTTAAGCATCAGGTACAACAGCTACGAGTCTTATTGCTACAGGCCCGTGGAGGTAGCC
TGCCTGGATCTATAAAAGCAGAACCATCAGAGAGTCTCCAGTCTCTGATGGAGAGGAATCAGTCCCTGGGAGAGGAGAAT
GAAAAGTTAAGCCATGCTCTGAGCGAGGCAGCTGGTCAGACAGCCCAGATGTTGGAAAGGATCATTGTGACAGAGCAAGC
AAATGAAAGACTGAACACCAAGCTGCAAGAGCTCAGGCATCACGAAGCCTGTAAAGTAGATCTCCAAAAGCTAATGGAGA
CTTTAGAAGACCAGGAATTAATAGAAAAAGTAGAGATAATTCGCAGTCTGCAACAAGCTGTCATTCATCTATCAGATGAA
AATGTTGTGGCCTCTGAATCGGCAATGGAAGCTCAAGTGGCAATCAGTCCAGAGAGTGGGAGGTCTTCTGATGCTCTCAC
CACACAGCATGCTCTACGCCAAGCTCAGATGTCTAAGGAACTTACTGAGCTGGATAAAGCTCTTGCAGTGAAAGAGGCCC
TAGCTAGGAAGATAACTTTCAATGGTGGCCAACTACAGCCCATTCACTGCCAGTATGAGACTAACATCAAAAGTCTAGAA
TCAGAAGTCACCTGTCTGCAGAAGGAAAAGGAACAATTGCTCCTGGATCTTCAGTTGGCAAAGAAGGATGTCAACCAAGC
CAAGTTGAGTGAGCACCGCCGCAAATGTCTTCAAGAGCTGGAAGCTCAAATAGCTGATTTGAAGAGGAAACTAAATGAAC
AGTCCAAGCTTCTGAAACTGAAAGAGTCCACTGAGAATACTGTCTCCAAACTGACTCTGGAGATACAGATGATGAAAACC
CAGCGAGTCCAGTTAATGCGTCGGATGAAGGAAGATGCTGAGAAGTCTAGACAGTGGAAACAACAAAAAGACAAGGAAGT
AATCCAGTTAAGAGAACAAGACCGTAAAAGGAGGTACGAGCTGGTTAAACTTGAAAGAGACTTCCAGAAACAGTCCAACG
TGCTCAGGCGTAAAACTGAAGAGGCAGCAGCTGCAAACAAGCGCCTCAAGGATGCCCTCCAAAAGCAACGGGAAGCAGCG
GAGAAGCGAAAAGAGACGCAGAACCGTGGCCTAGAAGGCACAGAAGCACAAGTGAAGAACTGGCTTACAAATGAGATTGA
AGTTATGGTCAGTACTGAAGAAGTCAAACACCACCTGAATGACCTTCTGGAAGAGCGGAAGAGACTAGCCCTGGATGTGG
CCCAACTTAAAGAAAACAAGGAACCCGGGGAAAACCCACCTCCTAAGCTCCAGAAGTGGACATCCCCTAGTGATGAAGTA
TGTGGTCCTATTTCTGAGCCTGAGGATTCTATTACAAAGCAGATTAGGAGCCTAGAGGCTGAAATAGAACTCAGGAGTGC
TCAGATTGCTGACCTACAGCAAAAGCTCCTGGATGCAGAAAGTGAAGACAGGCCAAAACGACACTGGGAAAATATCACCA
CAGTTCTCGAAGCCAAATGTGCTCTAAAGTATTTAGTTGGTGAGGTGGTTTCCTCCAAACTTCAGGTCAGTGAGCTTGAA
AGCAACCTGAAACAGAGCCAGGCAAGCCATTCTAAAATGCAGAAGATGCTGTTTGAGGAGCAAAGTCATCTTGTTGAGGT
AGAGACAGAGTTGAAAGCTGAGCTGCTCAAGGTGGAGCGAAAGCACCAAGAAAAGGTACTCTACTTTCTCAGTCAGCTGC
AGCAAAGCCAAATGGCAGAGAAGAAGCTGGAGGTGTCAGTTAGTGGGAAGGAACAGCAGCTGCTGAACACATTGCAGTGT
CAGGAGGATCAGTTTAGCAAAATGCAAGAATTATGTGAGCAAAACCAGCAGCTTCTTCAAGAGAATGAAGCCATCAGGCA
GAAACTGAGTCTCCTTCAAGGAGCCAAAGAGCAGAAATCTCATCTTCCCAAGGATGGCCTCCAATCTCCAGACTCTACCT
TTGACTACATCCCACCTCCACTCAAAGCACTCCATGTTAGAGGCAAGTTCCTGGATCAAAGCATGGACATTGATGATGTA
AAGTATCATTCAGAGCATTCCACGAGTGAATCTGAAGATAGTGATGGAAATGATAAGGAGTGGAAACCAAGGAAACTGGC
TAAAGTGTCCAGGAAGACTATCCAAGGGTGTTCCTGCAAGGGATGGTGTAGGAACAAACACTGTGGGTGCAGGAAACAAG
GGGTGGACTGCTGTGTGGCCTGTGGCTGTGACCCCACAAAGTGCCGGAACCGCCAGCAAGAAGAAGAGGGCTTGGGTACT
GTTGAGTGGAACCAGGATACTGATGGCTCCTTCAAACTGGACGACCCTACAGAGGTGACCCCAGGACTGAGCTTCTTCAA
CCCTGTCTGTGCCACTCCCAATACAAAGCTTCTTAAAGAGATGTGTGATATGGACCAGGCTCTGTTGCGGGAGACTGATC
TTGCAGTTTCCTTAGACCTCCCAGCCATAAAACACAGAGCAACAGAATCCCAAGAAAATAAGGCCACAGGGAAGAAAAAG
AAACGAGCTCTGGCCTGCAATAGCAACTTCTTCTCTGGTTGCTCTCCTGCCAAAGAAGAGGCGTGCTGA

ORF - retro_mmus_268 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.93 %
Parental protein coverage: 59.71 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalDTQVQSSPDTSRSSDVFSTQHALRQAQMSKELIELNKALALKEALAKKMTQNDNQLQPIQFQYQDNIKNL
..QV..SP...RSSD...TQHALRQAQMSKEL.EL.KALA.KEALA.K.T.N..QLQPI..QY..NIK.L
RetrocopyEAQVAISPESGRSSDALTTQHALRQAQMSKELTELDKALAVKEALARKITFNGGQLQPIHCQYETNIKSL
ParentalESEVLSLQREKEELVLELQTAKKDANQAKLSERRRKRLQELEGQIADLKKKLQEQSKLLKLKESTEHTVS
ESEV..LQ.EKE.L.L.LQ.AKKD.NQAKLSE.RRK.LQELE.QIADLK.KL.EQSKLLKLKESTE.TVS
RetrocopyESEVTCLQKEKEQLLLDLQLAKKDVNQAKLSEHRRKCLQELEAQIADLKRKLNEQSKLLKLKESTENTVS
ParentalKLNQEIRMMKNQRVQLMRQMKEDAEKFRQWKQQKDKEVIQLKERDRKRQYELLKLERNFQKQSNVLRRKT
KL..EI.MMK.QRVQLMR.MKEDAEK.RQWKQQKDKEVIQL.E.DRKR.YEL.KLER.FQKQSNVLRRKT
RetrocopyKLTLEIQMMKTQRVQLMRRMKEDAEKSRQWKQQKDKEVIQLREQDRKRRYELVKLERDFQKQSNVLRRKT
ParentalEEAAAANKRLKDALQKQKEVAEKRKETQSRGMESTAARMKNWLGNEIEVMVSTEEAKRHLNGLLEERKIL
EEAAAANKRLKDALQKQ.E.AEKRKETQ.RG.E.T.A..KNWL.NEIEVMVSTEE.K.HLN.LLEERK.L
RetrocopyEEAAAANKRLKDALQKQREAAEKRKETQNRGLEGTEAQVKNWLTNEIEVMVSTEEVKHHLNDLLEERKRL
ParentalAQDVAQLKEKRESGENPPLKLRRRTFSYDEIHGQDSGAEDSIAKQIESLETELELRSAQIADLQQKLLDA
A.DVAQLKE..E.GENPP.KL...T...DE..G..S..EDSI.KQI.SLE.E.ELRSAQIADLQQKLLDA
RetrocopyALDVAQLKENKEPGENPPPKLQKWTSPSDEVCGPISEPEDSITKQIRSLEAEIELRSAQIADLQQKLLDA
ParentalESEDRPKQRWESIATILEAKCAIKYLVGELVSSKILVSKLESSLNQSKASCIDVQKMLFEEQNHFAKIET
ESEDRPK..WE.I.T.LEAKCA.KYLVGE.VSSK..VS.LES.L.QS.AS....QKMLFEEQ.H....ET
RetrocopyESEDRPKRHWENITTVLEAKCALKYLVGEVVSSKLQVSELESNLKQSQASHSKMQKMLFEEQSHLVEVET
ParentalELKEELVKVEQQHQEKVLYLLSQLQQSQMTEKQLEESVSEKEQQLLSTLKCQEEELRKMQEVCEQNQQLL
ELK.EL.KVE..HQEKVLY.LSQLQQSQM.EK.LE.SVS.KEQQLL.TL.CQE....KMQE.CEQNQQLL
RetrocopyELKAELLKVERKHQEKVLYFLSQLQQSQMAEKKLEVSVSGKEQQLLNTLQCQEDQFSKMQELCEQNQQLL
ParentalQENSAIKQKLTLLQVASKQKPHLTRNIFQSPDSSFEYIPPKPKPCRIKEKCLEQSFAVEGLQYYSEPSVA
QEN.AI.QKL.LLQ.A..QK.HL.....QSPDS.F.YIPP..K......K.L.QS.......Y.SE.S..
RetrocopyQENEAIRQKLSLLQGAKEQKSHLPKDGLQSPDSTFDYIPPPLKALHVRGKFLDQSMDIDDVKYHSEHSTS
ParentalEQDNEDSDDHADEEWIPTKLVKVSKKSIQGCSCKGWCGNKQCGCRKQKSDCNVSCSCDPTKCRNRHQNQD
E....D..D....EW.P.KL.KVS.K.IQGCSCKGWC.NK.CGCRKQ..DC.V.C.CDPTKCRNR.Q...
RetrocopyESEDSDGND---KEWKPRKLAKVSRKTIQGCSCKGWCRNKHCGCRKQGVDCCVACGCDPTKCRNRQQEEE
ParentalNSDAIELNQDSENSFKLEDPTEVTSGLSFFHPICATPSSKILKEMCDADQVQLKQPVFVSSSDHPELKSI
.....E.NQD...SFKL.DPTEVT.GLSFF.P.CATP..K.LKEMCD.DQ..L.......S.D.P..K..
RetrocopyGLGTVEWNQDTDGSFKLDDPTEVTPGLSFFNPVCATPNTKLLKEMCDMDQALLRETDLAVSLDLPAIKHR
ParentalASESQENKAIGKKKKRALASNTSFFSGCSPIQEES
A.ESQENKA.GKKKKRALA.N..FFSGCSP..EE.
RetrocopyATESQENKATGKKKKRALACNSNFFSGCSPAKEEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 1 .43 RPM
SRP007412_cerebellum 0 .00 RPM 0 .61 RPM
SRP007412_heart 0 .00 RPM 0 .75 RPM
SRP007412_kidney 0 .00 RPM 0 .83 RPM
SRP007412_liver 0 .00 RPM 0 .27 RPM
SRP007412_testis 18 .43 RPM 5 .76 RPM

ChIP-Seq - click to see more details

RNA Polymerase II activity near the 5' end of retro_mmus_268 was not detected

EST - click to see more details

No EST(s) were mapped for retro_mmus_268 retrocopy.

TSS - click to see more details

No TSS is located nearby retro_mmus_268 retrocopy 5' end.

Lab - click to see more details

retro_mmus_268 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmus_268 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000155661 retrocopy
retro_cjac_2142,
Cavia porcellus ENSCPOG000000002111 retrocopy
retro_cpor_681,
Homo sapiens ENSG000000908891 retrocopy
retro_hsap_18,
Gorilla gorilla ENSGGOG000000066311 retrocopy
retro_ggor_2218,
Myotis lucifugus ENSMLUG000000110481 retrocopy
retro_mluc_114,
Mus musculus ENSMUSG00000034311 1 retrocopy
retro_mmus_268 ,
Pongo abelii ENSPPYG000000204381 retrocopy
retro_pabe_2700,
Rattus norvegicus ENSRNOG000000380351 retrocopy
retro_rnor_2330,


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