RetrogeneDB ID: retro_mmur_388

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2790:31305..31732(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: STARD3NL
• Ensembl ID: ENSMICG00000000945
• Aliases: None
• Description: STARD3 N-terminal like [Source:HGNC Symbol;Acc:19169]

Sequence

>retro_mmur_388
AACACATTAGAGAGGGAGGTAGTGCAGTATGACTACTATTCTTCTTATTTTGATAAATTTCTTTTGGCAGTTTTTCGATT
TAAAGTGTTAATACTTACATATGCTGTCTGCATACTGCGCCATTGGTGGGCAATAGTGTTGACAACAGCAGTGACCAGTG
CCTTTTTATTAGCAAAAGTGATCCTTTCAAAGCTTTTCTCTCAAGGGGCTTTTGGCTATGTGCTGCCCATCATTTCATTC
ATCCTTGCCTGGATTGAGACATGGTTCCTGGATTTCAAAGTGTTACCTCAAGAAGCAGAAGAAAACAGACTCCTGATAGT
TCAGGATGTTTCAGAGAGTGCGGCACTTTTTACCCGGTGGTCTTTCTGATGGTCAGTTTTATTCCCCTCCTGAATCTGAA
GCAGGATCTGAAGAAGCTGAAGAAAAG

Alignment

ORF - retro_mmur_388 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.44 %
• Parental protein coverage: 61.11 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  NTLEREVVQYDYYSSYFDIFLLAVFRFKVLILAYAVCRLRHWWAVALTTAVTSAFLLAKVILSKLFSQGA
          NTLEREVVQYDYYSSYFD.FLLAVFRFKVLIL.YAVC.LRHWWA..LTTAVTSAFLLAKVILSKLFSQGA
Retrocopy NTLEREVVQYDYYSSYFDKFLLAVFRFKVLILTYAVCILRHWWAIVLTTAVTSAFLLAKVILSKLFSQGA

Parental  FGYVLPIISFILAWIETWFLDFKVLPQEAEEENRLLIVQDASESAAL-LPGGLSDGQFYSPPESEAGSEE
          FGYVLPIISFILAWIETWFLDFKVLPQEAEE.NRLLIVQD.SESAAL.LPGGLSDGQFYSPPESEAGSEE
Retrocopy FGYVLPIISFILAWIETWFLDFKVLPQEAEE-NRLLIVQDVSESAAL>LPGGLSDGQFYSPPESEAGSEE

Parental  AEEK
          AEEK
Retrocopy AEEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_388 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_388 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000038795	1 retrocopy	retro_btau_264,
Choloepus hoffmanni	ENSCHOG00000008990	1 retrocopy	retro_chof_984,
Callithrix jacchus	ENSCJAG00000012622	1 retrocopy	retro_cjac_3042,
Cavia porcellus	ENSCPOG00000004394	1 retrocopy	retro_cpor_1237,
Dasypus novemcinctus	ENSDNOG00000017960	1 retrocopy	retro_dnov_2389,
Equus caballus	ENSECAG00000005250	1 retrocopy	retro_ecab_709,
Microcebus murinus	ENSMICG00000000945	1 retrocopy	retro_mmur_388 ,
Macaca mulatta	ENSMMUG00000023659	1 retrocopy	retro_mmul_2643,
Ictidomys tridecemlineatus	ENSSTOG00000014750	1 retrocopy	retro_itri_286,
Tursiops truncatus	ENSTTRG00000004099	1 retrocopy	retro_ttru_864,