RetrogeneDB ID: retro_mmur_1210

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_3314:103827..104685(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP5A1
• Ensembl ID: ENSMICG00000017500
• Aliases: None
• Description: ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle [Source:HGNC Symbol;Acc:823]

Sequence

>retro_mmur_1210
GCCATGAAGTACACTATTGTGGGGTCAGCTACAGCTTCTGATGCTGCCCCACTTCAGTACCTGGCTCCTTACTCTGGCTG
TTCCATGGGCGAGTATTTTAGAGATAATGGCAAACATGCTTTGATCATCTATGATGACTTATCCAAACAGGCTGCTGCTT
ACCGCCGGATGTCTCTGTTGCTCCGCCGACCCCCTGGTCGTGAGGCCTATCCTGGTGATGTGTCCTACCTGCACTCCCGG
TTGCTGGAGAGAGCAGCCAAGATGAACGATGCTTTTGGTGGTGGCACCTTGACTGCTCTACCAGTCATAGAAACACAGGC
TGGTGATGTGTCTGCTTACATTCCAACAAATGTCATTTCCATCACAGATGGACAGATCTTCTTGGAAACAGAATTGTTCT
ACGAGTGTATCCGTCCTGCCATTAATGTTGGTTTGTCTGTGTCTCGTGTCAGATCTGCTGCCCAAACCAGGGCTATGAAG
CAGGTGGCAGGTACCACGAAGCTGGAATTGGCTCAGTATCGTGAGGTTGCTGCTTTTGCCCAGTTCGGTTCTGACCTCGA
TGCTGCCACTCAACAACTCTTGAGTCGTGGTGTGCGTTTGACTGAGTTGCTGAAGCAAGGACAATATTCTCCCATGGCTA
TTGAAGAACAAGTGGCTGTTATCTATGCAGGTGTAAAAGGATATCTTGATAAATTGGAGCCCAGCAAGATCACAAAGTTT
GAGAACGCTTTCTTGTCTCATGCTGTCAGCCAGCACCAAACCCTGTTGAGCACTATCAAGGCTGATGGAAAGATCTCAGA
AGAGTCAGATGTAAAGCTGAAAGAGATTGTAACAAACTTCGTGGCTGGATTTGAAGGA

Alignment

ORF - retro_mmur_1210 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.8 %
• Parental protein coverage: 52.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY
          AMKYTIV.SATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA.AYR.MSLLLRRPPGREAY
Retrocopy AMKYTIVGSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAAAYRRMSLLLRRPPGREAY

Parental  PGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA
          PGDV.YLHSRLLERAAKMNDAFGGG.LTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY..IRPA
Retrocopy PGDVSYLHSRLLERAAKMNDAFGGGTLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYECIRPA

Parental  INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYS
          INVGLSVSRV.SAAQTRAMKQVAGT.KLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYS
Retrocopy INVGLSVSRVRSAAQTRAMKQVAGTTKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYS

Parental  PMAIEEQVAVIYAGVKGYLDKLEPSKITKFENAFLSHVVSQHQSLLSTIKADGKISEESDAKLKEIVTNF
          PMAIEEQVAVIYAGVKGYLDKLEPSKITKFENAFLSH.VSQHQ.LLSTIKADGKISEESD.KLKEIVTNF
Retrocopy PMAIEEQVAVIYAGVKGYLDKLEPSKITKFENAFLSHAVSQHQTLLSTIKADGKISEESDVKLKEIVTNF

Parental  VAGFEG
          VAGFEG
Retrocopy VAGFEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1210 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1210 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 18 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002507	2 retrocopies	retro_btau_1380, retro_btau_1426,
Canis familiaris	ENSCAFG00000017648	2 retrocopies	retro_cfam_1483, retro_cfam_516,
Dasypus novemcinctus	ENSDNOG00000006331	2 retrocopies	retro_dnov_1740, retro_dnov_2525,
Equus caballus	ENSECAG00000021561	1 retrocopy	retro_ecab_788,
Homo sapiens	ENSG00000152234	1 retrocopy	retro_hsap_1702,
Gorilla gorilla	ENSGGOG00000016560	1 retrocopy	retro_ggor_1275,
Meleagris gallopavo	ENSMGAG00000009963	1 retrocopy	retro_mgal_14,
Microcebus murinus	ENSMICG00000017500	1 retrocopy	retro_mmur_1210 ,
Myotis lucifugus	ENSMLUG00000009856	1 retrocopy	retro_mluc_1198,
Macaca mulatta	ENSMMUG00000003570	1 retrocopy	retro_mmul_1208,
Mustela putorius furo	ENSMPUG00000000923	1 retrocopy	retro_mputfur_601,
Nomascus leucogenys	ENSNLEG00000010973	1 retrocopy	retro_nleu_1334,
Oryctolagus cuniculus	ENSOCUG00000003967	1 retrocopy	retro_ocun_1235,
Pongo abelii	ENSPPYG00000009130	1 retrocopy	retro_pabe_1363,
Pan troglodytes	ENSPTRG00000009991	1 retrocopy	retro_ptro_1151,
Sarcophilus harrisii	ENSSHAG00000017177	1 retrocopy	retro_shar_109,
Tarsius syrichta	ENSTSYG00000007804	1 retrocopy	retro_tsyr_1186,
Tursiops truncatus	ENSTTRG00000005118	1 retrocopy	retro_ttru_159,