RetrogeneDB ID:

retro_mmul_145

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:16:38119795..38121808(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000014427
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:KIF2A
Ensembl ID:ENSMMUG00000000399
Aliases:None
Description:kinesin-like protein KIF2A [Source:RefSeq peptide;Acc:NP_001253787]


Retrocopy-Parental alignment summary:






>retro_mmul_145
ATGGCCAGTCAGTTCTGCCTCCCTGTATCCCCACGCCTCTCGCCCCTGAAACCCTTGAAGCCACATTTCGGAGACATCCA
AGTGGGCATCTACGTGGCTATCCAGCGCAGCGACAAGCGGTTGCACCTCGCTGTGGTCACAGAGATCAACAGAGAAAATT
CTTGGGTCACGGTAGAGTGGGTGGAGAAAGCAGTCAAAAAAGGCAAGAAGATTGACCTGGAGACCATACTTCTGCTGAAT
CCATCTCTGGACTCTGCTGAAGACCCCATGCCCGTATCCCCTTTGGCTCCCGCGCCCTCTTCGGCCATCAGGGACCAGAG
TACCGCCACGAAACGGGTTGTGATGATCCCCCAGAAAAACAAAACAGCCTCAGGGGACAGCCTGGACGTGAGGGTCCCCA
GCAAACCTTGTCTGATGAAGCAGAAAAAGTCTCCCTGCCTCCAGGAAATCGAGAAAGTGCAGAAGCAGCGGGAAAAGCGC
AGGCGGCTGCAGCAGGAGATCCGAGCTAGACGCGCCCTCGATGTCAACACCAGAAACCCCAACTACGAGATCATGCACAT
GATCGAAGAGTATCGCAGGCACCTGGACAGCAGCAAGATCTCAGTCCTGGAGCCCCGGCAAGAACATCGCATCTGCGTCT
GCGTGAGGAAGCGGCCTCTCAACCAGCGAGAGACCACCTTGAAGGACCTGGATATCATCACCGTCCCCTCGGACAATGTG
GTTATGGTGCATGAGTCCAAGCAAAAGGTGGACCTCACTCGCTACCTGGAGAACCAGACCTTCTGTTTCGACCATGCCTT
CGACGACAAAGCCTCCAACGAGTTGGTGTACCAGTTCACCGCCCAGCCACTGGTGGAGTCCATCTTCCGCAAGGGCATGG
CCACCTGCTTTGCCTACGGGCAGACGGGCAGTGGGAAGACGTACACCATGGGTGGAGACTTTGCAGGAAGGGCCCAAGAT
CATTCTAAGGGCATTTATGCTCTGGTGGCACAGGACGTCTTTCTCCTGCTCAGAAACTCCATATATGAGAAGCTGGACCT
CAAAGTCTATGGGACATTTTTTGAGATTTATGGGGGCAAGGTGTATGATTTGTTGAACTGGAAGAAGAAACTGCAAGTCC
TTGAGGATGGCAATCAGCAAATCCAAGTGGTCGGGCTGCAGGAGCAAGAAGTGTGTTGTGTGGAGGAAGTGCTGAACCTG
GTGGAATTAGGGAATAGCTGTCGGACTTCCAGGCAAACATCTGTCAACGCCCACTCATCCAGGAGCCATGCAGTTTTCCA
GATCATCCTGAAGTCGGGAGGGAAACTGCATGGCAAGTTTTCCCTGGTTGATTTAGCTGGCAATGAAAGGGGAGCAGATA
CGACCAAGGCCAGCCGGAAAAGGCAGCTGGAAGGGGCAGAGATTAACAAGAGTCTCCTAGCCCTCAAAGAATGTATTCTG
GCTTTGGGTCAGAACAAGCCTCATACCCCATTCAGAGCCAGCAAACTCACACAGGTGCTCCGGGACTCCTTTATAGGCCA
GAACTCCTCCACTTGCATGATTGCTACTATCTCTCCAGGGATGACCTCTTGTGAAAACACCCTCAACACTTTAAGATATG
CAAACAGAGTAAAAGAATTAAATGCAGATGGAAGGCCCTACCATCGTGGCCTCTATCCAAATGGACATGAGGCATCAAGG
ATGTTGAAAAGTCACATCGGAAATTCAGAAATGTCCCTTCAGAGGGATGAATTTATTAAAATACCTTGTGTACAGAGTGA
GGAGCAGCAGAAAGAGATTGAAGATGTTGAAAGAGCCACTCTTTTAGGGAAGGATACCACAACTTCAAGGAAGGGATCCA
GCCAATGGCTGGAGAACATCCAGGAGAGAACCGGTGGAGTAAACCATGATGTTGATTTTTGTATTGCCCAGTCTTTGTCC
ATTTTGGAGCAGAAAATTGGTGTTCTGACCGAGATCCAAAAGAAATTGAAATTATTACGAGCTGACCTCCACGTGAAGAG
CAAGGTAGAGTGA

ORF - retro_mmul_145 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.69 %
Parental protein coverage: 58.75 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalRRKSNCVKEVEKLQEKREKRRLQQQELREKRAQDVDATNPNYEIMCMIRDFRGSLDYRPLTTADPIDEHR
..KS.C..E.EK.Q..REKRR..QQE.R..RA.DV...NPNYEIM.MI...R..LD........P..EHR
RetrocopyQKKSPCLQEIEKVQKQREKRRRLQQEIRARRALDVNTRNPNYEIMHMIEEYRRHLDSSKISVLEPRQEHR
ParentalICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFT
ICVCVRKRPLN..ET..KDLD.IT.PS..VVMVHE.KQKVDLTRYLENQTF.FD.AFDD.A.NE.VY.FT
RetrocopyICVCVRKRPLNQRETTLKDLDIITVPSDNVVMVHESKQKVDLTRYLENQTFCFDHAFDDKASNELVYQFT
ParentalARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVY
A.PLVE.IF..GMATCFAYGQTGSGKT.TMGGDF.G..QD.SKGIYAL.A.DVFL.L....Y.KL.L.VY
RetrocopyAQPLVESIFRKGMATCFAYGQTGSGKTYTMGGDFAGRAQDHSKGIYALVAQDVFLLLRNSIYEKLDLKVY
ParentalATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSS
.TFFEIY.GKV.DLLN.K.KL.VLEDG.QQ.QVVGLQE.EV.CVE.VL.L...GNSCRTS.QTS.NAHSS
RetrocopyGTFFEIYGGKVYDLLNWKKKLQVLEDGNQQIQVVGLQEQEVCCVEEVLNLVELGNSCRTSRQTSVNAHSS
ParentalRSHAVFQIILRRKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTP
RSHAVFQIIL...GKLHGKFSL.DLAGNERGADT..A.R...LEGAEINKSLLALKECI.ALG.NKPHTP
RetrocopyRSHAVFQIILKSGGKLHGKFSLVDLAGNERGADTTKASRKRQLEGAEINKSLLALKECILALGQNKPHTP
ParentalFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELTVD
FRASKLTQVLRDSFIG.NS.TCMIATISPGM.SCENTLNTLRYANRVKEL..D
RetrocopyFRASKLTQVLRDSFIGQNSSTCMIATISPGMTSCENTLNTLRYANRVKELNAD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .11 RPM 83 .37 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 57 .67 RPM
SRP007412_cerebellum 0 .00 RPM 57 .02 RPM
SRP007412_heart 0 .06 RPM 8 .60 RPM
SRP007412_kidney 0 .12 RPM 15 .38 RPM
SRP007412_liver 0 .00 RPM 4 .43 RPM
SRP007412_testis 588 .92 RPM 87 .83 RPM

ChIP-Seq - click to see more details

Macaca mulatta was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mmul_145 retrocopy.

TSS - click to see more details

Macaca mulatta was not studied using FANTOM5 data.

Lab - click to see more details

retro_mmul_145 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_145 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 24 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Anas platyrhynchos ENSAPLG000000095191 retrocopy
retro_apla_3,
Bos taurus ENSBTAG000000150221 retrocopy
retro_btau_180,
Choloepus hoffmanni ENSCHOG000000078881 retrocopy
retro_chof_1348,
Cavia porcellus ENSCPOG000000093931 retrocopy
retro_cpor_72,
Dipodomys ordii ENSDORG000000063351 retrocopy
retro_dord_763,
Equus caballus ENSECAG000000198101 retrocopy
retro_ecab_32,
Homo sapiens ENSG000000687961 retrocopy
retro_hsap_69,
Gorilla gorilla ENSGGOG000000047741 retrocopy
retro_ggor_68,
Macaca mulatta ENSMMUG00000000399 1 retrocopy
retro_mmul_145 ,
Monodelphis domestica ENSMODG000000196051 retrocopy
retro_mdom_242,
Mus musculus ENSMUSG000000216931 retrocopy
retro_mmus_68,
Nomascus leucogenys ENSNLEG000000028651 retrocopy
retro_nleu_2329,
Oryctolagus cuniculus ENSOCUG000000104661 retrocopy
retro_ocun_156,
Otolemur garnettii ENSOGAG000000005275 retrocopies
retro_ogar_126, retro_ogar_3166, retro_ogar_3498, retro_ogar_3501, retro_ogar_672,
Ochotona princeps ENSOPRG000000117681 retrocopy
retro_opri_815,
Procavia capensis ENSPCAG000000050891 retrocopy
retro_pcap_22,
Rattus norvegicus ENSRNOG000000140002 retrocopies
retro_rnor_1284, retro_rnor_47,
Sorex araneus ENSSARG000000077681 retrocopy
retro_sara_457,
Sarcophilus harrisii ENSSHAG000000019501 retrocopy
retro_shar_30,
Ictidomys tridecemlineatus ENSSTOG000000127101 retrocopy
retro_itri_40,
Tupaia belangeri ENSTBEG000000093961 retrocopy
retro_tbel_761,
Tarsius syrichta ENSTSYG000000021151 retrocopy
retro_tsyr_1791,
Vicugna pacos ENSVPAG000000088641 retrocopy
retro_vpac_572,
Drosophila melanogaster FBgn00302682 retrocopies
retro_dmel_1, retro_dmel_2,


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