RetrogeneDB ID: retro_mluc_31

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429936:2094443..2095946(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025240
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: GMCL1
• Ensembl ID: ENSMLUG00000009183
• Aliases: None
• Description: None

Sequence

>retro_mluc_31
ATGGGGTCCTTGAGCAGTCACCTCCTGAGGGGCGGTAAATTAGGCACAACTGATCCGCATCAGCCAGAAGCCCAGGTAGG
CCCCGGAGATGTATCCTCAGGTCGAAAACGGAAGCGGAGCAGACCCTCTCCGGACCCAGAGGCTGAGAACAGCCCCAACC
CTCTAGACCCGGAAGACAATCTCCAGCAAGAAGCCACTACAAGCCGAAGTAAAAAAATGAAGGTCACATCTGATTATGCT
TACCGTACTTTATTTCTAAACGGGGAAACCAGTGACATTAAAATCCGCGCTCTGGGGAGAGTGTGGTGTCTACACAAAAT
GTATTTATGTCAGTCAGGCTACTTTGCTACTCTGTTTAAAAATTCTTGCGATGACTCTGACAAAGATATTATCGACCTAG
AGATTAAGGACCACAATATTGACGTCGCGTCCCTGAACTTCGTGCTAGGTTCCTTGTACGGGGGTGAATATGACTTAACG
GAGTCCCTTCAAATTCCAAGAATTTTGGCAACGGCATGCCTGCTTCAAGTAGAGGACTTAATTGAAGAGTGTGAGGAGAC
CATGAAGGAGGCAGTTAACGTGAAAACCGTCTGCGGCTACTATGCAACAGCAGAAGCCTATGAGTTAGAGTCTCTGAAGA
CAAAATGCTTTAACTGGCTTCTCCACAATCTGATGACGCATCCAAATGTTGAACTTTACAAAGCACTCAGTATAGAGCTC
ATGAATCTGCTCATTTCTTCAGCTAACTTACTAGTAATACAAAAGGAAATAGATGTGTACACCACACTTAAAGAGTGGAT
GTTCCTTCGTCTTAACCCGGCTTGGAAAGGATCCGTAAAAAAGCTTTTAAGCCATGCAAACAAATGGTTTTCCAGGCACA
GAGGACGTGTTGCCAGCATGGCCTTCCTTGAAACCAGACGAGGCATACCATTTCAATTGGTGTTTAAAAATTTGAGGTTT
CAGCATATCATCTGTGACCTGGCCTCCACAAGAGTTATTGAGCACGATACTCTAATACCTTCACATTGGTTATCGCAAGC
TTATAAGCAACAGTGGTTTACCTTGCTGAGAGTACGACAAAGCCAGGAAATCGGGCCGCGATACACCAATGAAATAGAAC
TTGAAGAATACAGCATGAGATGTGGGAAAATGCTTGTCAAGAAGGGGAAATTCTCCTGGAAGTGGTCGGGTTTCAACTTC
GGCTTTCCTTTGCACGTCATCTTCACCAGCGATTATATAATTTTCAAGCAAAACATCTTCCCTCATTCATGTGCGGGTCC
AGTTTGTCTACGATCTCTAAGAAATATTGCATTCAGATTAACTTTGGTATATTTCGATTCAAGTGGAAACTTAAGGTTCA
GCAAAACAACCGGTTATAAGACTCTTACCTTCCAGAACGATGAGGAACACCTGGTAATGAACTTAGACAGCAAATCTCTG
AGCTTCCCTTTATATATATTCTGTAACTTCCTGTTTACATCATTAGAAAATCTAGGAAACTGA

Alignment

ORF - retro_mluc_31 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.87 %
• Parental protein coverage: 85.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PESETDEEEEEGDEQQRLLNTPRSRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWSLHKIYLCQSGYF
          PE.E................T....KK.K.TS.Y.Y.TLFLNGE.SDIKI.ALG..W.LHK.YLCQSGYF
Retrocopy PEAENSPNPLDPEDNLQQEATTSRSKKMKVTSDYAYRTLFLNGETSDIKIRALGRVWCLHKMYLCQSGYF

Parental  SSMFSGSWKESSMNIIELEIPDQNIDVEALQVAFGSLYRDDV-LIKPSRVIAILAAACMLQLDGLIQQCG
          ...F..S...S...II.LEI.D.NIDV..L....GSLY.....L........ILA.AC.LQ...LI..C.
Retrocopy ATLFKNSCDDSDKDIIDLEIKDHNIDVASLNFVLGSLYGGEYDLTESLQIPRILATACLLQVEDLIEECE

Parental  ETMKETINVKTVCGYYTSAGTYGLDSVKKKCLEWLLNNLMTHQNVELFKELSINVMKLLIGSSNLFVMQV
          ETMKE..NVKTVCGYY..A..Y.L.S.K.KC..WLL.NLMTH.NVEL.K.LSI..M.LLI.S.NL.V.Q.
Retrocopy ETMKEAVNVKTVCGYYATAEAYELESLKTKCFNWLLHNLMTHPNVELYKALSIELMNLLISSANLLVIQK

Parental  EMDVYTALKKWMFLQLVPSWNGSLKQLLTETDVWFSKRKKVDFEGMTFLETEQGKPFVSVFRHLRLQYII
          E.DVYT.LK.WMFL.L.P.W.GS.K.LL.....WFS.R.......M.FLET..G.PF..VF..LR.Q.II
Retrocopy EIDVYTTLKEWMFLRLNPAWKGSVKKLLSHANKWFS-RHRGRVASMAFLETRRGIPFQLVFKNLRFQHII

Parental  SDLASARIIEQDSLIPSGWLSSVYKQQWLAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWR
          .DLAS.R.IE.D.LIPS.WLS..YKQQW...LR..Q..E.GP...N..ELE..SMRCG..L.K.G...W.
Retrocopy CDLASTRVIEHDTLIPSHWLSQAYKQQWFTLLRVRQSQEIGPRYTNEIELEEYSMRCGKMLVKKGKFSWK

Parental  WTGFNFGFDLLVTYTNRFIIFKRNTLNQPCSGSVSLQPRRSVAFRLRLASFDSSGKLICSRTTGYQILTL
          W.GFNFGF.L.V..T...IIFK.N.....C.G.V.L...R..AFRL.L..FDSSG.L..S.TTGY..LT.
Retrocopy WSGFNFGFPLHVIFTSDYIIFKQNIFPHSCAGPVCLRSLRNIAFRLTLVYFDSSGNLRFSKTTGYKTLTF

Parental  EKDQEQVVMNLDSRLLIFPLYICCNFLYISPE
          ..D.E..VMNLDS..L.FPLYI.CNFL..S.E
Retrocopy QNDEEHLVMNLDSKSLSFPLYIFCNFLFTSLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_31 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 19 parental genes, and 29 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016116	1 retrocopy	retro_amel_1915,
Choloepus hoffmanni	ENSCHOG00000012306	2 retrocopies	retro_chof_1562, retro_chof_802,
Equus caballus	ENSECAG00000016813	2 retrocopies	retro_ecab_1109, retro_ecab_899,
Homo sapiens	ENSG00000087338	1 retrocopy	retro_hsap_3407,
Loxodonta africana	ENSLAFG00000002565	3 retrocopies	retro_lafr_220, retro_lafr_592, retro_lafr_98,
Myotis lucifugus	ENSMLUG00000009183	2 retrocopies	retro_mluc_1521, retro_mluc_31 ,
Macaca mulatta	ENSMMUG00000000858	1 retrocopy	retro_mmul_98,
Mus musculus	ENSMUSG00000001157	1 retrocopy	retro_mmus_3665,
Nomascus leucogenys	ENSNLEG00000010132	1 retrocopy	retro_nleu_2993,
Oryctolagus cuniculus	ENSOCUG00000015808	2 retrocopies	retro_ocun_112, retro_ocun_160,
Otolemur garnettii	ENSOGAG00000008408	1 retrocopy	retro_ogar_151,
Pongo abelii	ENSPPYG00000012334	1 retrocopy	retro_pabe_209,
Pan troglodytes	ENSPTRG00000012021	1 retrocopy	retro_ptro_2314,
Pteropus vampyrus	ENSPVAG00000001242	3 retrocopies	retro_pvam_1259, retro_pvam_370, retro_pvam_816,
Sorex araneus	ENSSARG00000004651	1 retrocopy	retro_sara_425,
Sus scrofa	ENSSSCG00000008335	1 retrocopy	retro_sscr_62,
Ictidomys tridecemlineatus	ENSSTOG00000000714	1 retrocopy	retro_itri_59,
Tursiops truncatus	ENSTTRG00000007493	3 retrocopies	retro_ttru_1039, retro_ttru_1647, retro_ttru_1648,
Vicugna pacos	ENSVPAG00000001756	1 retrocopy	retro_vpac_617,