Parental gene:

GMCL1, ENSECAG00000016813

Aliases:None
Description:germ cell-less, spermatogenesis associated 1 [Source:HGNC Symbol;Acc:23843]
Organism:Horse (Equus caballus)
Coordinates:15:32597930..32643163(-)


>ENSECAG00000016813
GCCGGCCACGGCTTCTGTTACTGCCCGGGCAGCCGCAAGCGCAAGCGGAGCAGCGGGTTCTGCTACTGTCACCCCGACGA
GACAGACGAGGATGAGGAGGAAGGGGACGAGCAGCAGCGGCTCCTCAACACCCCTCGAAGGAAAAAATTAAAGAGTACCT
CCAAATATATTTATCAAACATTATTTTTGAATGGTGAAAATAGCGACATTAAGATTTGTGCTCTAGGAGAAGAATGGAGT
TTACACAAAATATATTTATGTCAATCTGGCTACTTTTCTAGTATGTTCAGTGGTTCTTGGAAAGAATCCAGCATGAATAT
TATTGAACTGGAGATTCCTGATCAGAATATTGATATAGAAGCACTGCAGGTTGCATTTGGGTCACTGTATCGAGATGATG
TCTTAATAAAGCCCAGTCGAGTTATTGCCATTTTGGCAGCAGCTTGTATGCTGCAGTTGGATGGTTTAATACAGCAGTGT
GGTGAGACAATGAAGGAAACAATTAATGTGAAAACTGTGTGTGGCTATTACACATCAGCAGGGACCTATGGATTAGATTC
TGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAACAATTTGATGACTCATCAGAATGTTGAGCTTTTTAAAGAACTCAGTA
TAAATGTCATGAAGCAGCTTATTGGTTCATCTAACTTATTTGTGATGCAAGTGGAGATGGATGTATATACAGCTCTTAAA
AAGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGATCTTTAAAACAGCTTTTGACTGAAACAGATGTCTGGTTTTC
TAAGAGGAGAAAAGATTTTGAAGGTATGACCTTCCTTGAAACTGAGCAGGGAAAACCATTTGTGTCAGTATTCAGACATT
TAAGGTTACAGTATATTATCAGTGATTTGGCCTCTGCAAGAATTATTGAACAAGATTCTCTAGTACCTTCAGAATGGTTA
TCTTCTGTTTATAAACAGCAGTGGCTTGCTATGCTCCGGGCAGAACAAGACAGTGAGGTGGGGCCTCAAGAAATCAATAA
AGAAGAACTAGAGGGAAATAGCATGAGGTGTGGTAGAAAGCTTGCCAAAGATGGTGAATACTGCTGGCGGTGGACAGGTT
TTAACTTCGGCTTTGACCTGCTTGTAACTTACACTAATCGATACATCATTTTCAAACGCAATACACTGAACCAGCCATGT
AGCGGATCCGTCAGTTTACAACCTCGAAGAAGCATAGCATTTAGATTACGTTTGGCCTCTTTTGATAGTAGTGGAAAACT
AATATGTAGTCGAACAACTGGCTATCAAATACTTACACTTGAAAAGGATCAGGAACAAGTAGTGATGAACTTGGACAGCA
GGCTTCTGATCTTCCCTTTATATATCTGCTGCAATTTCCTATATATATCACCGGAAAAAAGAACTGAAAATAATCGTCAT
CCAGAAAATCCAGAAAACTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 1 .48 RPM
SRP021940_cerebellum 1 .30 RPM
SRP021940_embryo 3 .17 RPM
SRP021940_placental_villous 1 .64 RPM
SRP021940_synovial_membrane 1 .04 RPM
SRP021940_testis 76 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016116 ortholog_one2one 1 retrogene
retro_amel_1915,
Choloepus hoffmanni ENSCHOG00000012306 ortholog_one2one 2 retrogenes
retro_chof_1562, retro_chof_802,
Homo sapiens ENSG00000087338 ortholog_one2one 1 retrogene
retro_hsap_3407,
Loxodonta africana ENSLAFG00000002565 ortholog_one2one 3 retrogenes
retro_lafr_220, retro_lafr_592, retro_lafr_98,
Myotis lucifugus ENSMLUG00000009183 ortholog_one2one 2 retrogenes
retro_mluc_1521, retro_mluc_31,
Macaca mulatta ENSMMUG00000000858 ortholog_one2many 1 retrogene
retro_mmul_98,
Mus musculus ENSMUSG00000001157 ortholog_one2one 1 retrogene
retro_mmus_3665,
Nomascus leucogenys ENSNLEG00000010132 ortholog_one2one 1 retrogene
retro_nleu_2993,
Oryctolagus cuniculus ENSOCUG00000015808 ortholog_one2one 2 retrogenes
retro_ocun_112, retro_ocun_160,
Otolemur garnettii ENSOGAG00000008408 ortholog_one2one 1 retrogene
retro_ogar_151,
Pongo abelii ENSPPYG00000012334 ortholog_one2many 1 retrogene
retro_pabe_209,
Pan troglodytes ENSPTRG00000012021 ortholog_one2one 1 retrogene
retro_ptro_2314,
Pteropus vampyrus ENSPVAG00000001242 ortholog_one2one 3 retrogenes
retro_pvam_1259, retro_pvam_370, retro_pvam_816,
Sorex araneus ENSSARG00000004651 ortholog_one2one 1 retrogene
retro_sara_425,
Sus scrofa ENSSSCG00000008335 ortholog_one2many 1 retrogene
retro_sscr_62,
Ictidomys tridecemlineatus ENSSTOG00000000714 ortholog_one2one 1 retrogene
retro_itri_59,
Tursiops truncatus ENSTTRG00000007493 ortholog_one2one 3 retrogenes
retro_ttru_1039, retro_ttru_1647, retro_ttru_1648,
Vicugna pacos ENSVPAG00000001756 ortholog_one2one 1 retrogene
retro_vpac_617,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_899 97.83 75.31
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2. retro_ecab_1109 50.58 52.67
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Download FASTA sequences of all ENSECAG00000016813 retrocopies