RetrogeneDB ID: retro_mluc_28

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429843:1659743..1660070(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030672
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: BRP44L
• Ensembl ID: ENSMLUG00000000583
• Aliases: None
• Description: None

Sequence

>retro_mluc_28
ATGGCGGCTGCGCTGTGGCGGAAGGCGTTGGACTACGTGAAGAACAAGGAGTTCCGCGACTATGTGACCAGCACGCACTT
TTGGGGTCCCCTGGCCAACTGGGGTCTGCCGCTGGCCGCCTTTCGGGACATGAAGGCCTCCCCAGAGATCATCAGCGGCC
GCATGACCATGGCGCTCATCTTCTACTCACTGGCCTTCATGCGCTTCGCCCACCGCGTGCAGCCCCGCAACCGGCTGCTC
ATGGCGTGTCATGGCGCCAACGTGATGGCGCAGAGCGTGCAGGGCAGCCGCCTGCTCATCCACCGCTACGGCAGCGGCGG
CCGCGGC

Alignment

ORF - retro_mluc_28 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.59 %
• Parental protein coverage: 90.83 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VSAALTRHSTVFPESIQFRVCILKDHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFA
          ..AAL.R..........FR......HFWGP.ANWGLP.AA..DMK.SPEIISGRMT.AL..YSL.FMRFA
Retrocopy MAAALWRKALDYVKNKEFRDYVTSTHFWGPLANWGLPLAAFRDMKASPEIISGRMTMALIFYSLAFMRFA

Parental  YKVQPRNWLLFVCHATNEVAQLIQGGRLI
          ..VQPRN.LL..CH..N..AQ..QG.RL.
Retrocopy HRVQPRNRLLMACHGANVMAQSVQGSRLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_28 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000027879	1 retrocopy	retro_btau_43,
Callithrix jacchus	ENSCJAG00000012552	2 retrocopies	retro_cjac_2102, retro_cjac_4053,
Dasypus novemcinctus	ENSDNOG00000001205	1 retrocopy	retro_dnov_2139,
Homo sapiens	ENSG00000060762	1 retrocopy	retro_hsap_4675,
Myotis lucifugus	ENSMLUG00000000583	1 retrocopy	retro_mluc_28 ,
Mus musculus	ENSMUSG00000023861	3 retrocopies	retro_mmus_2037, retro_mmus_3420, retro_mmus_979,
Ornithorhynchus anatinus	ENSOANG00000004153	1 retrocopy	retro_oana_45,
Pongo abelii	ENSPPYG00000017166	1 retrocopy	retro_pabe_17,
Rattus norvegicus	ENSRNOG00000012415	3 retrocopies	retro_rnor_1111, retro_rnor_2632, retro_rnor_296,
Tursiops truncatus	ENSTTRG00000004456	1 retrocopy	retro_ttru_663,