RetrogeneDB ID: retro_mluc_245

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429915:328690..330265(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023520
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000013546
• Aliases: None
• Description: None

Sequence

>retro_mluc_245
ATGCCGACCGTGGAGGAGCTCTACCGCAACTATGGCATCCTGGCCGATGCCATGGAGCAAGTGGGCCAGCATAAAGATGC
CTATCAAGTGATATTGGATGGTGTGAAAGGTGGTACCAAGGAAAAAAGATTAGCAGCTCAGTTTATTCCAAAATTCTTTA
AGCATTTTCCAGAATTGGCTGATTCTGCTATCAATGCACAGTTAGACCTCTGTGAGGATGAAGATGTATCAATTCGACGT
CAAGCAATTAAAGAGCTTCCTCAATTTGCCACCGGAGAAAATCTTCCCCGAGTGGCAGATATTCTAACCCAACTTTTGCA
AACAGATGACTCTGCAGAATTTAACTTAGTGAACAATGCCCTATTAAGTATATTTAAGATGGATGCAAAAGGGACTTTAG
GTGGCTTATTCAGCCAAATCCTTCAAGGAGAAGACATTGTTAGAGAACGAGCAATCAAATTCCTTTCTACAAAACTTAAG
ACTTTACCAGATGAGGTCTTAACAAAGGAAGTAGAGGAACTTATACTAACTGAATCCAAAAAGGTCCTAGAAGATGTGAC
TGGTGAAGAATTTGTCCTGTTCATGAAGATACTGTCTGGGTTAAAGAGCTTACAGACAGTGAGTGGAAGACAGCAACTTG
TAGAGTTGGTGGCTGAACAGGCTGACCTAGAACAAACCTTCAACCCGTCAGATCCCGACTGTGTGGACAGGCTCTTACAG
TGCACTTGGCAGGCGGTTCCCCTCTTCTCGAAAAACGTGCATTCCACAAGGTTTGTGACTTACTTCTGTGAGCAGGTTCT
ACCTAACCTCAGCTCCTTAACTACTCCAGTGGAGGGTCTTAATATACAGTTGGAGGTATTGAAACTGTTGGCGGAAATGT
GTTCATTTTGTGGTGACATGGAAAAGCTAGAAACAAATTTAAGGAAATTGTTTGATAAGCTATTGGAGTACATGCCTCTC
CCTCCAGAAGAAGCAGAAAATGGGGAGAATGCTGGTAATGAAGAACCTAAGCTGCAATTCAGTTATGTGGAATGTTTGTT
GTACAGCTTCCACCAGTTCTGTCGAAAACTTCCAGATTTCTTAACAGCCAAACTGAATGCAGAAAAGCTCAAAGATTTTA
AAATTAGGCTGCAGTACTTTGCACGGGGCCTGCAGGTTTATATCAGACAACTTCGCTTGGCTCTCCAGGGTAAAACAGGC
GAGGCCTTAAAAACAGACGAGAACAAGATTAAAGTTGTTGCATTGAAAATAACAAATAACATCAATGTTTTAATCAAGGA
TCTCTTCCACATTCCTCCCTCTTATAAGAGCACAGTAACATTATCCTGGAAACCTGTACAGAAGGTTGAAATTGGGCAAA
AGAGGGCCACTGAAGATACAACTTCTGGTTCACCACCCAAGAAATCTCCAGCAGGACCAAAAAGAGATGCAAGGCAGATT
TATAATCCTCCTAGTGGGAAATATAGCAGCAATTTGGGCAACTTTAATTATGAGCAGAGAGGAGCCTTCAGGGGAAGTGG
AGGTGGCCGAGGTTGGGGAGCACGAGGAAATCGTAGTCGGGGAAGACTCTACTGA

Alignment

ORF - retro_mluc_245 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.48 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDL
          MPTVEELYRNYGILADA.EQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDL
Retrocopy MPTVEELYRNYGILADAMEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDL

Parental  CEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTVDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ
          CEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQT.DDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ
Retrocopy CEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQT-DDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ

Parental  ILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSG
          ILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSG
Retrocopy ILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSG

Parental  RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLSSLTTPVEG
          RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCT.QAVPLFSKNVHSTRFVTYFCEQVLPNLSSLTTPVEG
Retrocopy RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTWQAVPLFSKNVHSTRFVTYFCEQVLPNLSSLTTPVEG

Parental  LDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYS
          L.IQLEVLKLLAEM.SFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYS
Retrocopy LNIQLEVLKLLAEMCSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYS

Parental  FHQLGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTDENKIKVVALKITN
          FHQ..RKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTDENKIKVVALKITN
Retrocopy FHQFCRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTDENKIKVVALKITN

Parental  NINVLIKDLFHIPPSYKSTVTLSWKPVQKVEIGQKRATEDTTSGSPPKKSPAGPKRDARQIYNPPSGKYS
          NINVLIKDLFHIPPSYKSTVTLSWKPVQKVEIGQKRATEDTTSGSPPKKSPAGPKRDARQIYNPPSGKYS
Retrocopy NINVLIKDLFHIPPSYKSTVTLSWKPVQKVEIGQKRATEDTTSGSPPKKSPAGPKRDARQIYNPPSGKYS

Parental  SNLGNFNYEQRGAFRGSRGGRGWGARGNRSRGRLY
          SNLGNFNYEQRGAFRGS.GGRGWGARGNRSRGRLY
Retrocopy SNLGNFNYEQRGAFRGSGGGRGWGARGNRSRGRLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_245 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000011993	1 retrocopy	retro_cpor_861,
Homo sapiens	ENSG00000166181	2 retrocopies	retro_hsap_2350, retro_hsap_4893,
Gorilla gorilla	ENSGGOG00000002358	2 retrocopies	retro_ggor_1784, retro_ggor_3055,
Myotis lucifugus	ENSMLUG00000013546	1 retrocopy	retro_mluc_245 ,
Macaca mulatta	ENSMMUG00000008827	1 retrocopy	retro_mmul_947,
Mus musculus	ENSMUSG00000027193	1 retrocopy	retro_mmus_2908,
Nomascus leucogenys	ENSNLEG00000017956	1 retrocopy	retro_nleu_352,
Pongo abelii	ENSPPYG00000003345	1 retrocopy	retro_pabe_3805,
Pan troglodytes	ENSPTRG00000003516	2 retrocopies	retro_ptro_1720, retro_ptro_3261,
Sorex araneus	ENSSARG00000003480	1 retrocopy	retro_sara_55,
Vicugna pacos	ENSVPAG00000012428	1 retrocopy	retro_vpac_289,