RetrogeneDB ID: retro_mluc_2250

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430146:657725..659029(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLU7
• Ensembl ID: ENSMLUG00000003091
• Aliases: None
• Description: None

Sequence

>retro_mluc_2250
TTCAGTGCCATGGTATATTGCTCCTCAAAAAGATCTAAAGAGAATTCCATACTAATAAGTACCGCAAAGGAGCATGTGAA
ATCTGTGGGGCCATGACACAGAAAAAGAAAGACTGCTTTGAGAGACTTAGGCGAGTTGGAGCAAAATTTACAAGAACTGA
CATAGCTCCAGACGAAAATGTCAAGCCTCAGCTGATGTTTGACTATGATGGGAAAAGGGATAGGTGGAATGGCTACAATC
CAGAAGAACGCATGGAAATTGTAGAAGAATATGCCAAAGTTGACCTGGCAAAATGAACACGGAAAACCCAGAAACTCCAG
GAAGAATTAACCTCAGGAAAATTAATGGAACAGGCTAATTCTCCAAAACACCAGTGGGAAGAAGAGGAACCTAATTCTAA
AATGGAAAAACACCATAATAGTGAGAATGAGGATGAAGGTAAATATGTAGATGACATTGACATGCCTGGACAGAACTTTG
ACTCTAAGAGACTGATTACTATTTGGAATCTCAGGATTCGAGAAGATATTTCAAAATATTTGCAGAATTTAGATCTAAAT
TCTGTTTCGTGTAATCCCAAAACTAGAGCGATGAGAGAAAATCCCTATGCCAATGCAGGAAAGAATCCAGATGAAGTGAG
CTATGTGGGAGACAACTTTGTTAGATACACAAGTGACACTATTTCAATGGTTCAGACACAGTTGTTTGCATGGGAAGCCT
ATGACAAGGGATCTGAAGTGCATCTGCAGGCCGATCCTACCAAACTAGAGCTCTTGTACAAGTCTTCAAGGTAAAAAAAA
AAAATGACTCCAAAGAACAGCAGAAAGAAAGCATCCTGGAAAAGTGTGGTGGCCAAGAACATTTGGATGCCCCTCCAGCT
GAGTTGCTTCTAGCTCAGACGGAAGACTATGTGGAGTACTCAAGGCATGGGACAGCCATTAAAGGATGGGAGCAGGCTGT
CGCCTGCTCCAGATATGAGGAGGATGTGAAGATCCACAATGACACGTGCATCTGGGGATCTTACTGGAAAGAAGGCCGAT
GGGGATACAAATGCTGTTACTCTTTTGTCAAACACTCCTATTGCACTAGAGAAGCTGGGGAGGAGATTGTGAATTCAGAG
GAACGTATTGTAAATGATATAACTAGAGAAGAATCTGTGAAAAAAACCTCAAACTCTCATAGAGATGCATTAGGAAAAAC
TACAAGAGGAGAAAAAGAAGAAGCATTGAAAGAGCAGCTCAGATAGTAATGATGAAGAAAAGAAACATGAAAAACTGAAA
AAGGCACTGAATGCAGAGGAGGCC

Alignment

ORF - retro_mluc_2250 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.05 %
• Parental protein coverage: 75.09 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  FSSSVEWYKRGVKENSI-TTKYREGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDY
          FS..V.......KENSI.T.KYR.GACE.CGAMT.KKKDCFER.RRVGAKFT.T.IAPDE.V.PQLMFDY
Retrocopy FSAMVYCSSKRSKENSI<TNKYRKGACEICGAMTQKKKDCFERLRRVGAKFTRTDIAPDENVKPQLMFDY

Parental  DGKRDRWNGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDH
          DGKRDRWNGYNPEE.M.IVEEYAKVDLAK.T.K.QKLQEEL.SGKL.EQANSPKHQW.EEEPNS.MEK.H
Retrocopy DGKRDRWNGYNPEERMEIVEEYAKVDLAK*TRKTQKLQEELTSGKLMEQANSPKHQWEEEEPNSKMEKHH

Parental  NSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKN
          NSE.EDE.KY.DDIDMPGQNFDSKR.IT..NLRIREDI.KYL.NLD.NS....PKTRAMRENPYANAGKN
Retrocopy NSENEDEGKYVDDIDMPGQNFDSKRLITIWNLRIREDISKYLQNLDLNSVSCNPKTRAMRENPYANAGKN

Parental  PDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKS-FKVKKEDFKEQQ-KES
          PDEVSY.GDNFVRYT.DTISM.QTQLFAWEAYDKGSEVHLQADPTKLELLYKS.FK.........Q.KES
Retrocopy PDEVSYVGDNFVRYTSDTISMVQTQLFAWEAYDKGSEVHLQADPTKLELLYKS<FKXXXXXDSKEQQKES

Parental  ILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYEEDVKIHNHTHIWGSYWKEGRW
          ILEK.GGQEHLDAPPAELLLAQTEDYVEYSRHGT.IKG.E.AVACS.YEEDVKIHN.T.IWGSYWKEGRW
Retrocopy ILEKCGGQEHLDAPPAELLLAQTEDYVEYSRHGTAIKGWEQAVACSRYEEDVKIHNDTCIWGSYWKEGRW

Parental  GYKCCHSFVKYSYCTGEAGKEIVNSEECLVDDITGEESV-KKPQTLMEIHQEKLKEDKKKKKKKKKKHRK
          GYKCC.SFVK.SYCT.EAG.EIVNSEE..V.DIT.EESV.KKPQTL.E.H.EKL.E.KKKK..K......
Retrocopy GYKCCYSFVKHSYCTREAGEEIVNSEERIVNDITREESV>KKPQTLIEMH*EKLQEEKKKKH*KS----S

Parental  SSSDSDDEEKKHEKLKKALNAEEA
          S.S.......KHEKLKKALNAEEA
Retrocopy SDSNDEEK--KHEKLKKALNAEEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2250 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000004484	1 retrocopy	retro_cpor_883,
Dipodomys ordii	ENSDORG00000006239	3 retrocopies	retro_dord_125, retro_dord_140, retro_dord_563,
Ficedula albicollis	ENSFALG00000013473	1 retrocopy	retro_falb_12,
Myotis lucifugus	ENSMLUG00000003091	2 retrocopies	retro_mluc_2250 , retro_mluc_2251,
Oryctolagus cuniculus	ENSOCUG00000011743	1 retrocopy	retro_ocun_818,
Otolemur garnettii	ENSOGAG00000012301	1 retrocopy	retro_ogar_1519,
Sorex araneus	ENSSARG00000012209	2 retrocopies	retro_sara_409, retro_sara_731,