Parental gene:

SLU7, ENSCPOG00000004484

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_17:7272414..7285014(-)


>ENSCPOG00000004484
ATGTCGGCAGCAGCTGTGGACACAGCCAACGCTGCACCCCTGTCGGGGTCCAAAGAAATGAATTTAGAGGAACCAAAGAA
GATGACTAGAGAAGACTGGAGAAAGAAGAAAGAGCTAGAAGAGCAACGCAAATTGGGCAATGCTCCTGCAGAAGTTGATG
AAGAAGGAAAAGACATCAATCCTCATATTCCTCAGTATATTTCTTCAGTGCCATGGTACATTGATCCATCAAAAAGACCC
ACCTTAAAGCATCAGAGACCACAGCCAGAAAAACAAAAGCAATTCAGCTCATCTGGCGAATGGTACAAGAGAGGTGTAAA
AGAGAATTCCATAACTACTAAGTACCGCAAAGGAGCGTGTGAGAATTGTGGGGCCATGACACACAAAAAGAAAGACTGCT
TCGAGAGACCTAGGCGAGTTGGAGCCAAATTCACAGGTATTAACATAGCTCCAGACGAACACATCCAGCCTCAGCTGATG
TTTGACTATGACGGGAAGAGAGATCGGTGGAATGGCTACAATCCAGAAGAGCACATGAAGATCGTGGAGGAGTATGCCAA
AGTCGATCTGGCGAAACGAACATTGAAAGCACAGAAACTTCAAGAAGAATTGGCTTCAGGAAAATTAGTAGAACAAGCTA
ATTCTCCAAAACACCAGTGGGGAGAAGAGGAACCAAACTCTCAGATGGAAAAAGATCACAATAGCGAGGATGAGGATGAA
GATAAGTATGCAGATGACATTGACATGCCTGGACAGAATTTTGACTCCAAGAGACGAATCACTGTTCGGAACCTCAGGAT
TCGAGAAGACATTGCAAAATATTTGAGAAATTTGGATCCAAATTCTGCCTACTATGATCCAAAAACTAGAGCAATGAGAG
AGAATCCATATGCTAATGCAGGGAAGAATCCAGATGAAGTGAGTTATGCTGGAGATAACTTCGTTAGATACACAGGGGAT
ACTATCTCAATGGCTCAGACACAGTTGTTTGCTTGGGAAGCCTATGACAGAGGATCTGAAGTGCACCTGCAGGCAGATCC
TACCAAACTAGAGCTGCTGTATAAGTCCTTCAAAGTCAAAAAAGAAGACTTCAAGGAACAACAGAAAGAGAGTATCCTGG
AAAAGTATGGTGGCCAAGAACACTTGGATACGCCTCCAGTTGAATTGCTCTTAGCCCAGACTGAAGACTACGTGGAGTAC
TCGAGACATGGCACAGTCATTAAAGGCCAGGAGCGGGCCATTGCCTGCTCCAAGTATGAGGAAGATGTGAAGATCAACAA
TCACACGCACATCTGGGGATCCTACTGGAAAGACGGCAAATGGGGATATAGATGCTGCCACTCATTTTTCAAGTATTCCT
ATTGTACAGGGGAAGCTGGGAAGGAGACTCTGAATTCAGAGGAATGTATTACAGATGATATAAACGGAGAAGAATCTATG
AAAAAACCTCAGACCCTCATGGAGATTTGTAAGTCCAGAAGGAAGGACTTTCAAACATGTACTAGATCCTTGTGTTTACA
CCACCGAAAGAGCAGTTCAGAGAGTGATGATGAAGAAAAGAAACATGAAAAACTGAAAAAGGCATTGAATGCAGAGGAGG
CCCGCCTTCTTCAGGTCAAGGAGATCATGCAGGTTGATGAGAGGAAGCGACCTTATAATAGCATATATGAAGCTCGGGAG
CCCACTGAGGAGGAAATGGAGGCCTACAGGATGAAACGCCAGAGGCCAGATGACCCCATGGCCTCCTTCCTTGGACAGTA
G

Library Parental gene expression (RPM)
SRP017611_brain 31 .75 RPM
SRP017611_kidney 31 .62 RPM
SRP017611_liver 22 .16 RPM
SRP040447_lung 35 .01 RPM
SRP040447_skeletal_muscle 12 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000006239 ortholog_one2one 3 retrogenes
retro_dord_125, retro_dord_140, retro_dord_563,
Ficedula albicollis ENSFALG00000013473 ortholog_one2many 1 retrogene
retro_falb_12,
Myotis lucifugus ENSMLUG00000003091 ortholog_one2one 2 retrogenes
retro_mluc_2250, retro_mluc_2251,
Oryctolagus cuniculus ENSOCUG00000011743 ortholog_one2one 1 retrogene
retro_ocun_818,
Otolemur garnettii ENSOGAG00000012301 ortholog_one2one 1 retrogene
retro_ogar_1519,
Sorex araneus ENSSARG00000012209 ortholog_one2many 2 retrogenes
retro_sara_409, retro_sara_731,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_883 76.41 50.68
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Download FASTA sequences of all ENSCPOG00000004484 retrocopies