Parental gene:

SLU7, ENSOCUG00000011743

Aliases:None
Description:SLU7 splicing factor homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16939]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:41811715..41826790(-)


>ENSOCUG00000011743
ATGTCAGCAGCAGCTGTGGACGCAGTTAATGCTGCACCCCTGTCGGGGTCCAAAGAAATGAGTTTGGAGGAACCAAAGAA
GATGACTAGAGAGGACTGGAGGAAGAAGAAGGAGCTAGAAGAACAGCGAAAACTGGGTAATGCTCCTGCAGAAGTTGATG
AAGAAGGGAAAGACATCAACCCTCATATTCCTCAGTATATCTCATCCGTACCATGGTATATTGATCCATCGAAAAGACCT
ACTTTAAAGCATCAGAGACCACAGCCAGAGAAACAGAAGCAATTCAGTTCATCTGGAGAATGGTACAAGAGGGGTGTGAA
AGAGAATTCCATAACTACGAAGTACCGAAAAGGAGCCTGTGAAAATTGTGGGGCCATGACACACAAAAAGAAAGACTGCT
TTGAGAGACCCAGGCGAGTTGGAGCCAAATTTACAGGTACTAATATCGCTCCAGATGAACATATCCAGCCTCAACTGATG
TTTGACTACGATGGGAAGAGGGATCGATGGAATGGCTACAATCCAGAAGAACACATGAAAATTGTAGAAGAGTATGCCAA
AGTTGATCTGGCAAAACGAACACTGAAAGCCCAGAAACTCCAGGAAGAACTGGCCTCAGGAAAATTAGTAGAACAAGCTA
ATTCTCCAAAACACCAGTGGGGAGAAGAGGAACCAAATTCTCAGACGGAAAAAGATCATAATAGTGAAGATGAAGATGAA
GATAAATATGCAGATGACATTGACATGCCTGGGCAGAATTTTGACTCTAAGAGACGAATTACTGTTCGGAATCTCAGAAT
TCGAGAAGATATTGCAAAATATTTGAGAAATTTAGATCCAAATTCTGCCTACTATGATCCAAAAACTAGAGCAATGAGAG
AGAATCCTTATGCCAATGCAGGAAAGAATCCAGATGAAGTGAGTTATGCAGGAGATAACTTCGTTAGATACACAGGAGAT
ACCATTTCAATGGCTCAGACACAGTTGTTTGCTTGGGAGGCGTATGACAAAGGATCTGAAGTGCATCTGCAGGCAGATCC
CACAAAACTAGAATTGTTGTATAAGTCCTTCAAAGTCAAAAAAGAAGACTTCAAAGAGCAGCAGAAAGAAAGCATCCTGG
AAAAGTATGGTGGCCAAGAACACCTGGATGCTCCCCCAGCTGAACTGCTGTTAGCCCAAACTGAAGACTACGTGGAGTAC
TCAAGACATGGAACAGTCATCAAAGGACAGGAGCGGGCAGTTGCCTGCTCCAAGTATGAGGAGGATGTGAAGATCAATAA
TCACACACATATCTGGGGATCTTACTGGAAAGAAGGCCGATGGGGATACAAGTGCTGTCACTCTTTTTTCAAGTATTCTT
ATTGTACTGGAGAAGCTGGAAAGGAGACTGCCAATTCTGAGGAATGTATTATAAATGATACAGGTGGAGAAGAGTCTGCA
AAAAAGCCACAAACCCTCATGGAAATGCATCAGGAGAAAATGCATCGCAGGAGCAGTTCAGATAGTGATGATGAAGAAAA
GAAACATGAGAAATTGAAAAAGGCACTCAATGCAGAGGAAGCCCGCCTCCTTCAGGTCAAGGAGATCATGCAGATCGATG
AGAGGAAGCGGCCTTACAATAGCATCTATGAGACTCGAGAGCCCACTGAAGAGGAAATGGAAGCCTACAGAATGAAACGT
CAGAGGCCGGACGACCCCATGGCCTCTTTCCTTGGACAGCAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 47 .90 RPM
SRP017611_kidney 34 .77 RPM
SRP017611_liver 17 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000004484 ortholog_one2one 1 retrogene
retro_cpor_883,
Dipodomys ordii ENSDORG00000006239 ortholog_one2one 3 retrogenes
retro_dord_125, retro_dord_140, retro_dord_563,
Ficedula albicollis ENSFALG00000013473 ortholog_one2many 1 retrogene
retro_falb_12,
Myotis lucifugus ENSMLUG00000003091 ortholog_one2one 2 retrogenes
retro_mluc_2250, retro_mluc_2251,
Otolemur garnettii ENSOGAG00000012301 ortholog_one2one 1 retrogene
retro_ogar_1519,
Sorex araneus ENSSARG00000012209 ortholog_one2many 2 retrogenes
retro_sara_409, retro_sara_731,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_818 98.17 85.54
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Download FASTA sequences of all ENSOCUG00000011743 retrocopies