RetrogeneDB ID: retro_mluc_2157

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430065:316640..317279(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OAZ1
• Ensembl ID: ENSMLUG00000004446
• Aliases: None
• Description: None

Sequence

>retro_mluc_2157
ATGGAATCCTCCCTGCAGCGGACCCTCAACAGCCACTGTTTCACCAGAGAGACGGAGGGGAGTAAACCCAGCGCCACTGG
TCACGCCAGTCGCACCATGGCTCATCAGTCTGCACACCCGCGCGGCCACAGCAGCAGAGTTCCAGGGTCTCCCTTAACTG
TAGTTCCCTGGGCCTGGGCCTCCGTGGTGCTCCTCATGTCCCTCACCCACCCCTCAAGATCCCAGGTGGGCGAGGGAATA
GTCGGAGGGATCCCAATCTTTCAGCTAATTTATTTTACTCGGATAACAGGCTGAATGTAACAGAGGAACTAACGTCTAAT
AACAAGACGAGAATTCTCAACGTCCAGACCTGGCTCACAGATGCCAAACACGGTAACTGGAGAGCAGTGCTGAGCAGCAG
CTGCCTCTGCATCGAGATCCCAGGCAGGGCTCTGCCCTGGGGAGCAGACAGCTCGCAGGTCTCCTGGAGTTTGCAGAGGA
GCAGCTGCATGCTGGCCATGTCTTCATTTGCCTCCACAGCTCCGTGATGGCAGAGCCGCTCTGCTCCGTCCCTGCAGCTT
TATGGGCTCTGAGACTCTGAGACCGGGCAGCCCTTGCCCCCAAGAGACCCGACACTTGCTTCACGGCCACACGTTTGAG

Alignment

ORF - retro_mluc_2157 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.11 %
• Parental protein coverage: 96.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  VKSSLQRILNSHCFAREKEGNKPSVTVHPSRTMPLISLHSRGGRSS-ESSRVSLNCCSNLGPGPQWCD-V
          ..SSLQR.LNSHCF.RE.EG.KPS.T.H.SRTM...S.H.RG..SS..SSRVSLNC.S.LG.G......V
Retrocopy MESSLQRTLNSHCFTRETEGSKPSATGHASRTMAHQSAHPRG-HSS<QSSRVSLNC-SSLGLGLRGAPHV

Parental  PHPPLKIPGGRGNSQRDHNLSANLFYSDNRLNVTEELTSNNKTRILNVQTRLTDAKHINWRAVLSSSCLY
          PHPPLKIPGGRGNS.RD.NLSANLFYSDNRLNVTEELTSNNKTRILNVQT.LTDAKH.NWRAVLSSSCL.
Retrocopy PHPPLKIPGGRGNSRRDPNLSANLFYSDNRLNVTEELTSNNKTRILNVQTWLTDAKHGNWRAVLSSSCLC

Parental  IEIPGGALPEGSKDSFAV-LLEFAEEQLHADHVFICFHKN-RDDRAALLRTFSFMGFEIVRP-GHPLVP-
          IEIPG.ALP.G..DS..V.LLEFAEEQLHA.HVFIC.H...RD.RAALLR..SFMG.E..RP.G.PL.P.
Retrocopy IEIPGRALPWGA-DSSQV<LLEFAEEQLHAGHVFICLHSS<RDGRAALLRPCSFMGSETLRP<GQPLPP<

Parental  KRPDACFMA-YTFE
          KRPD.CF.A..TFE
Retrocopy KRPDTCFTA<HTFE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2157 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000016529	2 retrocopies	retro_dord_558, retro_dord_654,
Echinops telfairi	ENSETEG00000017945	2 retrocopies	retro_etel_2073, retro_etel_452,
Myotis lucifugus	ENSMLUG00000004446	2 retrocopies	retro_mluc_1524, retro_mluc_2157 ,
Myotis lucifugus	ENSMLUG00000022795	2 retrocopies	retro_mluc_1003, retro_mluc_2416,
Mus musculus	ENSMUSG00000035242	1 retrocopy	retro_mmus_1622,
Nomascus leucogenys	ENSNLEG00000002179	1 retrocopy	retro_nleu_2435,
Pongo abelii	ENSPPYG00000009345	1 retrocopy	retro_pabe_476,