RetrogeneDB ID: retro_etel_2073

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_47304:972..1372(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000008520
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: OAZ1
• Ensembl ID: ENSETEG00000017945
• Aliases: None
• Description: ornithine decarboxylase antizyme 1 [Source:HGNC Symbol;Acc:8095]

Sequence

>retro_etel_2073
ATGGTGAAATCCTCCCTGCAGCAGATCCTCAACAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCAC
CGTCCGCCCCAGCCGCACCATGCCGCTCCTCAGCCTGCACAGCCGCGGCGGCCGCAGCAGCGAGAGTTCCAGGCTCCCCC
TCAATTGCTGTAGTAACCTGGGTCCAGGGCCTCGGTGGTGTTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGTGG
GCGAGGGGATAGTCAGAGGGATCACAATCTTTCAGCCAAGTTATTTTACTCGGATAATCGGCTGACAGTAACAGCGGAAC
TAGCGTCTAATGACAAGACCAGGATTCTTAACGTCCAGTCCAGGCTCACGGAGTCCAAACATGTCACCAGGAGGGCTGTG

Alignment

ORF - retro_etel_2073 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.04 %
• Parental protein coverage: 58.41 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVKSSLQRILNSYCFAREKEGDKPSATVRSSRIMPLLSLHSRGGCSSESSRLPLNCCSNLGPGPRWCD-A
          MVKSSLQ.ILNS.CFAREKEGDKPSATVR.SR.MPLLSLHSRGG.SSESSRLPLNCCSNLGPGPRWC...
Retrocopy MVKSSLQQILNSHCFAREKEGDKPSATVRPSRTMPLLSLHSRGGRSSESSRLPLNCCSNLGPGPRWCS*C

Parental  PHP-PLKIPGGRGDSQRDHNLSAKLFYSDNRLTVTEELASNDKTRILNVQSRLTESKHVTWRAV
          P.P.PLKIPGGRGDSQRDHNLSAKLFYSDNRLTVT.ELASNDKTRILNVQSRLTESKHVT.RAV
Retrocopy PSP>PLKIPGGRGDSQRDHNLSAKLFYSDNRLTVTAELASNDKTRILNVQSRLTESKHVTRRAV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_2073 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000016529	2 retrocopies	retro_dord_558, retro_dord_654,
Echinops telfairi	ENSETEG00000017945	2 retrocopies	retro_etel_2073 , retro_etel_452,
Myotis lucifugus	ENSMLUG00000004446	2 retrocopies	retro_mluc_1524, retro_mluc_2157,
Mus musculus	ENSMUSG00000035242	1 retrocopy	retro_mmus_1622,
Nomascus leucogenys	ENSNLEG00000002179	1 retrocopy	retro_nleu_2435,
Pongo abelii	ENSPPYG00000009345	1 retrocopy	retro_pabe_476,