RetrogeneDB ID: retro_mluc_1003

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429787:9304279..9304783(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000013391
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: OAZ2
• Ensembl ID: ENSMLUG00000022795
• Aliases: None
• Description: ornithine decarboxylase antizyme 2 [Source:HGNC Symbol;Acc:8096]

Sequence

>retro_mluc_1003
AGGCACATTGTTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACTGTCGAAGATCCCCGGTGGGCAAGGGGGCG
GCAGGGATCCTTCTCTCTCAGCTCTAATATATAAGGACGAGAAGCTCACTGTGACCCAGGACCTCCCTGTGAACGATGGA
AAACCTCAGATCGTCCACTTCCAGTATGAGGTCACTGAGGTGAAGGTCTCTTCCTGGGATGCAGTCCTGTCCAGCCAGAG
CCTGTTTATAGAAATCCCAGATGGAGTATTAGCTGATGGGAGCAAAGAAGGATTGTTAGCACTGCTGGAGTTTGCGGAAG
AGAAGATGAAAGTGAACTATGTCTTCGTCTGCTTCAGGAAGGGCGGGAAGACAGAGCTCCACTCCTGAAGACCTTCAGCT
TCTTGGGCTTTGAGATTGTACGTCCAGGCCATCCCTGTGTACCCTCTCGGCCAGATGTGATGTTCATGGTTTACCCCCTG
GACCAGAACTTGCCCAATGAGCAC

Alignment

ORF - retro_mluc_1003 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.29 %
• Parental protein coverage: 88.83 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RHIVPGPLWCD-APHP-LSKIPGGRGGGRDPSLSALIYKDEKLTVTQDLPVNDGKPHIVHFQYEVTEVKV
          RHIVPGPLWC...P.P.LSKIPGG.GGGRDPSLSALIYKDEKLTVTQDLPVNDGKP.IVHFQYEVTEVKV
Retrocopy RHIVPGPLWCS*CPSP>LSKIPGGQGGGRDPSLSALIYKDEKLTVTQDLPVNDGKPQIVHFQYEVTEVKV

Parental  SSWDAVLSSQSLFIEIPDGVLADGSKEGLLALLEFAEEKMKVNYVFVCFRK-GREDRAPLLKTFSFLGFE
          SSWDAVLSSQSLFIEIPDGVLADGSKEGLLALLEFAEEKMKVNYVFVCFRK.GREDRAPLLKTFSFLGFE
Retrocopy SSWDAVLSSQSLFIEIPDGVLADGSKEGLLALLEFAEEKMKVNYVFVCFRK<GREDRAPLLKTFSFLGFE

Parental  IVRPGHPCVPSRPDVMFMVYPLDQNLPNEH
          IVRPGHPCVPSRPDVMFMVYPLDQNLPNEH
Retrocopy IVRPGHPCVPSRPDVMFMVYPLDQNLPNEH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1003 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007344	1 retrocopy	retro_mmur_1013,
Myotis lucifugus	ENSMLUG00000004446	2 retrocopies	retro_mluc_1524, retro_mluc_2157,
Myotis lucifugus	ENSMLUG00000022795	2 retrocopies	retro_mluc_1003 , retro_mluc_2416,
Mus musculus	ENSMUSG00000040652	2 retrocopies	retro_mmus_1343, retro_mmus_2305,
Oryctolagus cuniculus	ENSOCUG00000017341	1 retrocopy	retro_ocun_1612,
Ochotona princeps	ENSOPRG00000009548	2 retrocopies	retro_opri_1184, retro_opri_145,
Tupaia belangeri	ENSTBEG00000008091	1 retrocopy	retro_tbel_2493,
Tursiops truncatus	ENSTTRG00000011834	1 retrocopy	retro_ttru_502,