RetrogeneDB ID: retro_mluc_1776

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429907:900608..901304(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COQ2
• Ensembl ID: ENSMLUG00000015267
• Aliases: None
• Description: None

Sequence

>retro_mluc_1776
GGAACCCAGCTGCTCTATCTGCCATGTACCTGGAGCATTGGTTTGACAGCCAAACTAGGTTGATTTCCAGATTGGTACAT
GCTATCCCTCTTTGGCACTGGATTTATTCTTATATATGGAGCAGACTGTACTAGTAATGATATGTGGGACTGGGACTATG
ATAAAAAGGTTTACAAGAACAGCAAATTGCCCAATAGCTGCTAGAGACATTTCAACTTTTCAGTCCTTCTTTTTTGTCAG
GGGACAGCCGACCCTGGCACTGTTCTGTGTCTGAATTACTACAGTATAGCTCTTGGAACAGCCTTCCTTCTTCTTGTCAT
CACCTACCCGCTAATGAAAAGAATTATGTACTGGCCTCAATTAGCCCTGGGGTTCTCTTTTAATTAGAGAGCTTTACTTG
GATGGTCTGCTGTCAAGGGCTCCTGTGATCCATCTGTTTGCCTGCCTCTTTATTTTTCTGGAATTATGTGGACTCTAATA
TATGATACTATCCAGTCCCATCAGGACAAAAGAGATGATGTGCTGATTGGTTTTAAGTCCACGGCACTGAAGTTCTGTGA
AAACACCAAGCGGCGGCTCATTGGCTTCAGTGTAATGATGCTGGGGGCACTGAGCCTGCTGGGAGTAAACAGTGGTCATA
CTGCACCCTACTCCTCTGCTCAGGCTGCTGTCGGAGCCCATCCGACTCACCATATT

Alignment

ORF - retro_mluc_1776 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.85 %
• Parental protein coverage: 81.25 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GTWLLYLPCTWSIGLAAEPGSFPDWYMLSLFGTGAVLMRGAGCTINDMWDRDYDKKV-TRTATRPIAAGD
          GT.LLYLPCTWSIGL.A..G.FPDWYMLSLFGTG..L..GA.CT.NDMWD.DYDKKV.TRTA..PIAA.D
Retrocopy GTQLLYLPCTWSIGLTAKLG*FPDWYMLSLFGTGFILIYGADCTSNDMWDWDYDKKV>TRTANCPIAARD

Parental  IST-FQSFVFLGGQLTLALGVLLCLNYYSIALGAASLLLVITYPLMKRITYWPQLALGFTFNWGALLGWS
          IST.F....F..G..T...G..LCLNYYSIALG.A.LLLVITYPLMKRI.YWPQLALGF.FN..ALLGWS
Retrocopy IST<FSVLLFCQG--TADPGTVLCLNYYSIALGTAFLLLVITYPLMKRIMYWPQLALGFSFN*RALLGWS

Parental  AVKGSCDPFVCLPLYFSGIMWTLIYDTIYAHQDKRDDALIGVKSTALRFRENTKQWLSGFSVAMLGALSL
          AVKGSCDP.VCLPLYFSGIMWTLIYDTI..HQDKRDD.LIG.KSTAL.F.ENTK..L.GFSV.MLGALSL
Retrocopy AVKGSCDPSVCLPLYFSGIMWTLIYDTIQSHQDKRDDVLIGFKSTALKFCENTKRRLIGFSVMMLGALSL

Parental  VGVNTGQTVPYYTALAAVAAHLTHQI
          .GVN.G.T.PY..A.AAV.AH.TH.I
Retrocopy LGVNSGHTAPYSSAQAAVGAHPTHHI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1776 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 37 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005006	1 retrocopy	retro_amel_1898,
Bos taurus	ENSBTAG00000005744	1 retrocopy	retro_btau_1835,
Cavia porcellus	ENSCPOG00000011458	1 retrocopy	retro_cpor_1202,
Equus caballus	ENSECAG00000012542	1 retrocopy	retro_ecab_432,
Myotis lucifugus	ENSMLUG00000015267	1 retrocopy	retro_mluc_1776 ,
Mus musculus	ENSMUSG00000029319	1 retrocopy	retro_mmus_2883,
Tarsius syrichta	ENSTSYG00000013801	30 retrocopies	retro_tsyr_1015, retro_tsyr_1155, retro_tsyr_1173, retro_tsyr_1180, retro_tsyr_1207, retro_tsyr_1235, retro_tsyr_1327, retro_tsyr_1335, retro_tsyr_1385, retro_tsyr_1451, retro_tsyr_1491, retro_tsyr_1646, retro_tsyr_1709, retro_tsyr_1742, retro_tsyr_2015, retro_tsyr_2062, retro_tsyr_2087, retro_tsyr_2136, retro_tsyr_2146, retro_tsyr_466, retro_tsyr_513, retro_tsyr_533, retro_tsyr_54, retro_tsyr_548, retro_tsyr_607, retro_tsyr_619, retro_tsyr_654, retro_tsyr_776, retro_tsyr_839, retro_tsyr_995,
Tursiops truncatus	ENSTTRG00000005647	1 retrocopy	retro_ttru_1726,