RetrogeneDB ID: retro_mluc_1623

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429874:1261589..1262091(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000010603
• Aliases: None
• Description: None

Sequence

>retro_mluc_1623
AATAGCACAAGTCCCTTGAAGCAGTGGAAAATTGGTGACAAATGTTCTGCCATTTGGTCAGGAGAAGACTGCATTTACCC
AGCGATCTTTGCTGCCATTGATTTTAAGAGCGAGAACTGTGATGTGGCTTTTACCGGCTGCGGAAATAGAGAGGAGCAAA
ATCTGTCTGATCTACTTTCCACAAGGGCTGAAGTGGCTAATAACATAGAACAGGGTGCTCAGGAGAATGAAAATGAAAGT
CAAATTTCAACAGATGAAATGATAACTCCTGCATGTATCCTGGAAACAAACCAAATAACAGCAAGTCAAAAGCTGTTCTG
TGGAACCCTTCTCTCCCTCCACCCCTCTCCCCAGGTCAGGATCAGAACTGGCACCAGGAAAGCTATGTCTAAAATTCAAT
GGCCCACCACCCTTCCTATCATGCTGGCTGCCTTCATTTCCCTCTGAACCACCAATAATCCCACCACCACCTCCCATATG
TCCAGATTCTCTTGATGATCCT

Alignment

ORF - retro_mluc_1623 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.12 %
• Parental protein coverage: 54.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  NTTTPLKQWKVGDKCSAIWSEDGCIYPATIASVDFKRETCVVVYTGYGNREQQNLSDLLSPTSDVANNIE
          N.T.PLKQWK.GDKCSAIWS...CIYPA..A..DFK.E.C.V..TG.GNRE.QNLSDLLS....VANNIE
Retrocopy NSTSPLKQWKIGDKCSAIWSGEDCIYPAIFAAIDFKSENCDVAFTGCGNREEQNLSDLLSTRAEVANNIE

Parental  QNAQENENESQISTDE-SENSSRSRGNKPNNIKSRAAPWNYFLPP-PPPMPRSGLG-PGKPGLKFNGPPP
          Q.AQENENESQISTDE...NS....GNKPNN.KS.A..WN..LPP.P.P..R...G.PGK..LKFNGPPP
Retrocopy QGAQENENESQISTDE<NDNSCMYPGNKPNNSKSKAVLWNPSLPP>PSPQVRIRTG>PGKLCLKFNGPPP

Parental  PPPPPPPPPPPPPPFLSCWLPPFPSGPPIIPPP
          ......P..P..PP......PP.P..P.....P
Retrocopy FLSCWLPSFPSEPPIIP---PPPPICPDSLDDP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1623 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000012328	1 retrocopy	retro_cpor_988,
Dasypus novemcinctus	ENSDNOG00000007283	4 retrocopies	retro_dnov_1239, retro_dnov_1613, retro_dnov_1637, retro_dnov_2175,
Echinops telfairi	ENSETEG00000001406	2 retrocopies	retro_etel_1549, retro_etel_2012,
Homo sapiens	ENSG00000205571	1 retrocopy	retro_hsap_4140,
Gorilla gorilla	ENSGGOG00000026704	1 retrocopy	retro_ggor_2780,
Myotis lucifugus	ENSMLUG00000010603	1 retrocopy	retro_mluc_1623 ,
Macaca mulatta	ENSMMUG00000020214	1 retrocopy	retro_mmul_216,
Nomascus leucogenys	ENSNLEG00000004454	1 retrocopy	retro_nleu_1054,
Oryctolagus cuniculus	ENSOCUG00000017097	1 retrocopy	retro_ocun_617,
Pan troglodytes	ENSPTRG00000016955	1 retrocopy	retro_ptro_2813,
Sus scrofa	ENSSSCG00000016970	1 retrocopy	retro_sscr_654,
Ictidomys tridecemlineatus	ENSSTOG00000012288	1 retrocopy	retro_itri_968,
Tupaia belangeri	ENSTBEG00000002399	1 retrocopy	retro_tbel_1033,