RetrogeneDB ID: retro_mluc_1484

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429847:884988..885438(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM18B1
• Ensembl ID: ENSMLUG00000002825
• Aliases: None
• Description: None

Sequence

>retro_mluc_1484
TGTACTCCATATTCTCCATGAATTGTTGCCTTCATGGTGACAATTACCTTGTTGTCATGTGACTTTGGGCAGTCCAGCAT
GTCACAGGTAAACTAATGGTTGGTGTGCATTGATAGAATCATATGGATGAAGATGGAAAAAGCCATTGGGTGTTTGAGTC
CAAGAAGGCATCCCCCCAAGAAAATAAAACTGTATTAGGGGCCAAGTCAAGAATATTCTGGTCAGGACTTGTTGCCTGTC
CAGTGCTGTGGGTCATTTCACCTTCAGGGCTCTCTTCTCCTTCAGAGTGAAGTGGGTGGCAGTGCTTACCCTGGGTGTGG
TGCTACAAGGTGCCAACCTGTATGGCTGCAGCAGGTGCAAAGTGGGCAGTGGGAAGAATTTAACCAGCATGGCTACATCT
TGTCTTAGAAAGTAGTTTCCAGATAAAGCACTGGAGAGGATCAAACTTCC

Alignment

ORF - retro_mluc_1484 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.61 %
• Parental protein coverage: 75.62 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  CELFSSSFIACMVTIILLLSCDF-WAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQENKNVSEA
          C...S....A.MVTI.LL.SCDF.WAV..VTG.LMVG....NH.DEDGKSHWVFES.KASPQENK.V..A
Retrocopy CTPYSP*IVAFMVTITLL-SCDF<WAVQHVTGKLMVGVH**NHMDEDGKSHWVFESKKASPQENKTVLGA

Parental  ESRIFWLGLIACPVLWVI-FAFSALFSFRLKWLAVVTMGVVLQGANLYGYIRCKVGSRKNLTSMATSYLG
          .SRIFW.GL.ACPVLWVI.F.F.ALFSFR.KW.AV.T.GVVLQGANLYG..RCKVGS.KNLTSMATS.L.
Retrocopy KSRIFWSGLVACPVLWVI<FTFRALFSFRVKWVAVLTLGVVLQGANLYGCSRCKVGSGKNLTSMATSCLR

Parental  KQF-LRQNTGDDQTS
          K.F..R..TG.DQTS
Retrocopy K*F<SR*STGEDQTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1484 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 31 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000005330	1 retrocopy	retro_cpor_184,
Dasypus novemcinctus	ENSDNOG00000007609	2 retrocopies	retro_dnov_1041, retro_dnov_1390,
Homo sapiens	ENSG00000171928	1 retrocopy	retro_hsap_2278,
Homo sapiens	ENSG00000175106	1 retrocopy	retro_hsap_1625,
Loxodonta africana	ENSLAFG00000003854	1 retrocopy	retro_lafr_465,
Microcebus murinus	ENSMICG00000015098	4 retrocopies	retro_mmur_1331, retro_mmur_151, retro_mmur_161, retro_mmur_683,
Myotis lucifugus	ENSMLUG00000002825	1 retrocopy	retro_mluc_1484 ,
Macaca mulatta	ENSMMUG00000019203	5 retrocopies	retro_mmul_1032, retro_mmul_2125, retro_mmul_278, retro_mmul_600, retro_mmul_748,
Nomascus leucogenys	ENSNLEG00000014658	2 retrocopies	retro_nleu_1961, retro_nleu_2008,
Oryctolagus cuniculus	ENSOCUG00000000498	1 retrocopy	retro_ocun_759,
Otolemur garnettii	ENSOGAG00000012225	1 retrocopy	retro_ogar_978,
Pan troglodytes	ENSPTRG00000007790	1 retrocopy	retro_ptro_20,
Pan troglodytes	ENSPTRG00000008796	1 retrocopy	retro_ptro_996,
Rattus norvegicus	ENSRNOG00000050649	1 retrocopy	retro_rnor_636,
Ictidomys tridecemlineatus	ENSSTOG00000000642	6 retrocopies	retro_itri_1415, retro_itri_1841, retro_itri_310, retro_itri_473, retro_itri_711, retro_itri_782,
Tarsius syrichta	ENSTSYG00000008082	2 retrocopies	retro_tsyr_2000, retro_tsyr_530,