RetrogeneDB ID: retro_mluc_1216

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429807:2936031..2936382(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UCHL1
• Ensembl ID: ENSMLUG00000010138
• Aliases: None
• Description: None

Sequence

>retro_mluc_1216
GTCCTGGCCTGGCTGAAGGTCGACAACCAGTGGTGCTTTATGGAATTGCTGGGCCTGGAGGAGGAGGCTTGGAGCTTGGA
AATAGCACCAGCCTGCTTGCTGCTGCTACTGTTTCCACTCATTGACCAGCTTGAGAACTTCTGGGGGAAACATATTGAAG
AACTGAAGGGACAAGAAGTAAGTCCTAAAGTGTACTTTATGAAGCGGACCATTGAGAACTCCTGTGGTACCATCCAACTT
ATACACACAGTAGCCACTAATTAAGACAAACTGGACTTTGTTTTTATGCCAATCATTCTCTATTTTCTTCAGGCCATTCA
GGCAGCCCATGACTCCGTGGCGCAGGAATGC

Alignment

ORF - retro_mluc_1216 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.12 %
• Parental protein coverage: 52.47 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VLARLGVAGQWRFVDVLGLEEDALSSVPAPVCALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQT
          VLA.L.V..QW.F...LGLEE.A.S...AP.C.LLLLFPL..Q.ENF..K.IEELKGQEVSPKVYFMK.T
Retrocopy VLAWLKVDNQWCFMELLGLEEEAWSLEIAPACLLLLLFPLIDQLENFWGKHIEELKGQEVSPKVYFMKRT

Parental  IGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKC
          I.NSCGTI.LIH.VA.N.DKL.F........FL.............C
Retrocopy IENSCGTIQLIHTVATN*DKLDFVFMPIILYFLQAIQAAHDSVAQEC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1216 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019346	1 retrocopy	retro_cjac_365,
Erinaceus europaeus	ENSEEUG00000002185	3 retrocopies	retro_eeur_150, retro_eeur_573, retro_eeur_598,
Echinops telfairi	ENSETEG00000012347	1 retrocopy	retro_etel_44,
Homo sapiens	ENSG00000154277	2 retrocopies	retro_hsap_781, retro_hsap_782,
Gorilla gorilla	ENSGGOG00000008809	1 retrocopy	retro_ggor_648,
Macropus eugenii	ENSMEUG00000013774	1 retrocopy	retro_meug_8,
Myotis lucifugus	ENSMLUG00000003442	1 retrocopy	retro_mluc_362,
Myotis lucifugus	ENSMLUG00000010138	2 retrocopies	retro_mluc_1216 , retro_mluc_2113,
Nomascus leucogenys	ENSNLEG00000017176	2 retrocopies	retro_nleu_2582, retro_nleu_2583,
Oryctolagus cuniculus	ENSOCUG00000001353	1 retrocopy	retro_ocun_309,
Pan troglodytes	ENSPTRG00000016009	2 retrocopies	retro_ptro_3028, retro_ptro_3029,
Tarsius syrichta	ENSTSYG00000008305	1 retrocopy	retro_tsyr_1191,