Parental gene:

UCHL1, ENSPTRG00000016009

Aliases:None
Description:ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12513]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:41316789..41328405(+)


>ENSPTRG00000016009
ATGCAGCTCAAGCCGATGGAGATCAACCCCGAGGTGAGCGCCAGGGTGCTGTCCCGGCTGGGGGTCGCCGGCCAGTGGCG
CTTCGTGGACGTGCTGGGGCTGGAAGAGGAGTCTCTGGGCTCGGTGCCAGCGCCTGCCTGCGCGCTGCTGCTGCTGTTTC
CCCTCACGGCCCAGCATGAGAACTTCAGGAAAAAGCAGATTGAAGAGCTGAAGGGACAAGAAGTTAGTCCTAAAGTGTAC
TTCATGAAGCAGACCATTGGGAATTCCTGTGGCACAATCGGACTTATTCACGCAGTGGCCAATAATCAAGATAAACTGGG
ATTTGAGGATGGATCAGTTCTGAAACAGTTTCTTTCTGAAACAGAGAAAATGTCCCCTGAAGACAGAGCAAAATGCTTTG
AAAAGAATGAGGCCATACAGGCAGCCCATGATGCCGTGGCACAGGAAGGCCAATGTCGGGTAGATGACAAGGTGAATTTC
CATTTTATTCTGTTTAACAACGTGGATGGCCACCTCTATGAACTTGATGGACGAATGCCTTTTCCGGTGAACCATGGCGC
CAGTTCAGAGGACACCCTGCTGAAGGACGCTGCCAAGGTCTGCAGAGAATTCACCGAGCGTGAGCAAGGAGAAGTCCGCT
TCTCTGCTGTGGCTCTCTGCAAGGCAGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 627 .29 RPM
SRP007412_cerebellum 156 .01 RPM
SRP007412_heart 5 .28 RPM
SRP007412_kidney 19 .09 RPM
SRP007412_liver 5 .11 RPM
SRP007412_testis 8 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000019346 ortholog_one2many 1 retrogene
retro_cjac_365,
Erinaceus europaeus ENSEEUG00000002185 ortholog_one2one 3 retrogenes
retro_eeur_150, retro_eeur_573, retro_eeur_598,
Echinops telfairi ENSETEG00000012347 ortholog_one2many 1 retrogene
retro_etel_44,
Homo sapiens ENSG00000154277 ortholog_one2one 2 retrogenes
retro_hsap_781, retro_hsap_782,
Gorilla gorilla ENSGGOG00000008809 ortholog_one2one 1 retrogene
retro_ggor_648,
Macropus eugenii ENSMEUG00000013774 ortholog_one2many 1 retrogene
retro_meug_8,
Myotis lucifugus ENSMLUG00000010138 ortholog_one2one 2 retrogenes
retro_mluc_1216, retro_mluc_2113,
Nomascus leucogenys ENSNLEG00000017176 ortholog_one2one 2 retrogenes
retro_nleu_2582, retro_nleu_2583,
Oryctolagus cuniculus ENSOCUG00000001353 possible_ortholog 1 retrogene
retro_ocun_309,
Tarsius syrichta ENSTSYG00000008305 ortholog_one2one 1 retrogene
retro_tsyr_1191,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3028 62.09 78.48
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2. retro_ptro_3029 58.71 87.00
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Download FASTA sequences of all ENSPTRG00000016009 retrocopies