RetrogeneDB ID: retro_mluc_1145

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429799:3197953..3198347(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GLIPR2
• Ensembl ID: ENSMLUG00000011791
• Aliases: None
• Description: None

Sequence

>retro_mluc_1145
CAGCACGGCCTACCCCTGCGGAAGCTCTGTAAGGGGCTCATCTAGGAGGCTTAGCAATATTCAGAGCCCTGGCCAGCATG
AGGACCCCCAAGCCCACCCCGGAGTCCAGCCCCAGCCAGCGCAGAGAGAACCTGGCTTGGGCATCCTACGGTCAGACAGG
AAAGGAGGTGGCTGATACATGGTACAGTGTAATTAAGAATTGCAGCTTCCAGCAGCCTGGGTTCAACTCTAAGACTGGAC
ACTTCAGTCCATGGTATGGGAGAATACAAAGAGGATGGGAGTAGAGAGAGCATCTGCAAGGGATGGGTCCTCCTTCGTGT
TGGCTAGACACTTCCCATCAGGGAATGTCCTCAACCAGGGCATCTTTGAAGAAAATGTCCTGCCTCCAAAGAAG

Alignment

ORF - retro_mluc_1145 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.9 %
• Parental protein coverage: 87.42 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QHGVPPLKLCKKLNREAQQYSE-ALASTRILKHSPESSRGQCGENLAWASYDQPGQEVADRWYSEIKNYN
          QHG.P..KLCK.L..EA.QYSE.ALAS.R..K..PESS..Q..ENLAWASY.Q.G.EVAD.WYS.IKN..
Retrocopy QHGLPLRKLCKGLI*EA*QYSE<ALASMRTPKPTPESSPSQRRENLAWASYGQTGKEVADTWYSVIKNCS

Parental  FQQPGFTSGTGHFT-AMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNQGFFEENVLPPKK
          FQQPGF.S.TGHF...MVW.NTK.MGV..ASA.DGSSFV.AR.FP.GNV.NQG.FEENVLPPKK
Retrocopy FQQPGFNSKTGHFS<SMVWENTKRMGVERASARDGSSFVLARHFPSGNVLNQGIFEENVLPPKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1145 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000030686	1 retrocopy	retro_cfam_428,
Dasypus novemcinctus	ENSDNOG00000008950	1 retrocopy	retro_dnov_2040,
Dipodomys ordii	ENSDORG00000012831	1 retrocopy	retro_dord_342,
Felis catus	ENSFCAG00000012762	2 retrocopies	retro_fcat_115, retro_fcat_1587,
Microcebus murinus	ENSMICG00000017673	1 retrocopy	retro_mmur_1525,
Myotis lucifugus	ENSMLUG00000011791	2 retrocopies	retro_mluc_1145 , retro_mluc_475,
Mus musculus	ENSMUSG00000028480	1 retrocopy	retro_mmus_2458,
Rattus norvegicus	ENSRNOG00000014838	1 retrocopy	retro_rnor_2217,
Tupaia belangeri	ENSTBEG00000009276	2 retrocopies	retro_tbel_1646, retro_tbel_4682,