RetrogeneDB ID: retro_ggor_830

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 12:101282789..101283136(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NENF
• Ensembl ID: ENSGGOG00000025197
• Aliases: None
• Description: None

Sequence

>retro_ggor_830
CAGGAGAAGGATCAGCCCATCTATTTGGCAGTGAAGGGAGTGGGGCTTGATGTCACCTCTGGAAAGGGGTTTTATGGACA
AAGAGCCCCCTACAATGCCTTGACCAGGAAGGACTCTGCTAGAGGGGTAGCCAAGGTGTCCTTGGATCATGTAGACCTCA
CCTGTGACACACCACAGGTCTCATAGCCAAGAAGTTGTAGTCCATGGATGATGTCTTCACCAGTGTGTACAAAGCCAAAC
ACCCAATTGTCAGCTACAGGGCTCAGACAATTCTCAATGAGTTTGGCAGTCCCAATCTGGACTTCAAGACTGAAGACCAG
CCCCTTTCTGACAAGAAGGAAGGGTTC

Alignment

ORF - retro_ggor_830 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.78 %
• Parental protein coverage: 67.43 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EEEDQPIYLAVKGVVFDVTSGKVFYFSRGFFPFKPIQGLNNSNSKAGISSNCAQHQTDIE-TGLTAKELE
          .E.DQPIYLAVKGV..DVTSGK.FY..R...P.............A..S........D...TGL.AK.L.
Retrocopy QEKDQPIYLAVKGVGLDVTSGKGFYGQRA--PYNALTRKDSARGVAKVSLDHVDLTCDTP<TGLIAKKL*

Parental  ALDEVFTKVYKAKYPIVGYTARRILNEDGSPNLDFKPEDQPHFDIKDEF
          ..D.VFT.VYKAK.PIV.Y.A..ILNE.GSPNLDFK.EDQP..D.K..F
Retrocopy SMDDVFTSVYKAKHPIVSYRAQTILNEFGSPNLDFKTEDQPLSDKKEGF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	12.18 RPM
SRP007412_cerebellum	0.00 RPM	15.13 RPM
SRP007412_heart	0.00 RPM	17.04 RPM
SRP007412_kidney	0.00 RPM	23.84 RPM
SRP007412_liver	0.00 RPM	15.33 RPM
SRP007412_testis	0.00 RPM	7.15 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_830 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_830 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001341	1 retrocopy	retro_amel_836,
Bos taurus	ENSBTAG00000000759	1 retrocopy	retro_btau_1238,
Dasypus novemcinctus	ENSDNOG00000003399	1 retrocopy	retro_dnov_1256,
Felis catus	ENSFCAG00000031796	1 retrocopy	retro_fcat_1171,
Homo sapiens	ENSG00000117691	2 retrocopies	retro_hsap_3288, retro_hsap_379,
Gorilla gorilla	ENSGGOG00000025197	1 retrocopy	retro_ggor_830 ,
Macaca mulatta	ENSMMUG00000002142	2 retrocopies	retro_mmul_2064, retro_mmul_490,
Mus musculus	ENSMUSG00000037499	1 retrocopy	retro_mmus_3309,
Nomascus leucogenys	ENSNLEG00000002893	1 retrocopy	retro_nleu_1354,
Ochotona princeps	ENSOPRG00000014204	2 retrocopies	retro_opri_127, retro_opri_775,
Pongo abelii	ENSPPYG00000000236	2 retrocopies	retro_pabe_2717, retro_pabe_328,
Pan troglodytes	ENSPTRG00000001961	2 retrocopies	retro_ptro_2224, retro_ptro_295,
Sus scrofa	ENSSSCG00000015597	1 retrocopy	retro_sscr_393,
Ictidomys tridecemlineatus	ENSSTOG00000022293	2 retrocopies	retro_itri_1876, retro_itri_340,
Tarsius syrichta	ENSTSYG00000001880	3 retrocopies	retro_tsyr_1189, retro_tsyr_411, retro_tsyr_549,