RetrogeneDB ID: retro_etel_888

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_180291:1301..1525(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000010426
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000020301
• Aliases: None
• Description: None

Sequence

>retro_etel_888
AAGATTGCTAGCATGCCCACGGTAACTCGGAGGCTGAGAGATCCTGACATGATCCTTGCTTGTCGGAATCTGATTCATCG
ACCCGATGCAGGGGTGAAAATAACTATGGCAGGGAAAGGTGTTCTCCTTACTTCTTGAAGTACAAAAACAGAGAAGTCTG
GAATTCTGTCATGGTTCAGAAACAACAAAATGGATCAAAGCCACCTATACCTACCGCAGCAGAG

Alignment

ORF - retro_etel_888 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.43 %
• Parental protein coverage: 85.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KTASMPMVTRRLRDPDI-NPCLSESDLSTRCLDENNYNRERCSAYFLKYKNCRRFWNSILVERRQKGVKP
          K.ASMP.VTRRLRDPD...PCLSESD.STRC..ENNY.RERCS.YFLKYKN.R..WNS..V...Q.G.KP
Retrocopy KIASMPTVTRRLRDPDM<DPCLSESDSSTRCRGENNYGRERCSPYFLKYKN-REVWNSVMVQKQQNGSKP

Parental  PMPTASE
          P.PTA.E
Retrocopy PIPTAAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_888 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007055	1 retrocopy	retro_cfam_1197,
Echinops telfairi	ENSETEG00000020301	2 retrocopies	retro_etel_1330, retro_etel_888 ,
Monodelphis domestica	ENSMODG00000024930	1 retrocopy	retro_mdom_1124,
Ictidomys tridecemlineatus	ENSSTOG00000002724	1 retrocopy	retro_itri_278,