Parental gene:

HNRNPA3, ENSTSYG00000012949

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_6504:192..7289(+)


>ENSTSYG00000012949
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGTCGCCGCCGGGGGGAGGAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCAGGGGCTTTGGTTTT
GTGACTTACTCTTGTGTTGAAGAGGGGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGGCGTGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAAATTGAAACCATAGAAGTTATGGAAGAC
AGGCAGAGTGGGAAAAAAAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCGAAACAAGAGATGCAGTCTGCTGGATCACAAA
GAGGTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTGGT
GGAAACTTTGGCGGAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATA
TAATGGATTTGGAGGTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAA
AGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATG
GTAGCAGAAGGTTCTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011920 ortholog_one2one 4 retrogenes
retro_amel_1407, retro_amel_557, retro_amel_715, retro_amel_765,
Ficedula albicollis ENSFALG00000003215 ortholog_one2one 1 retrogene
retro_falb_15,
Gallus gallus ENSGALG00000009250 ortholog_one2one 1 retrogene
retro_ggal_10,
Monodelphis domestica ENSMODG00000019803 ortholog_one2one 1 retrogene
retro_mdom_1590,
Mustela putorius furo ENSMPUG00000014103 possible_ortholog 6 retrogenes
retro_mputfur_1141, retro_mputfur_1336, retro_mputfur_1545, retro_mputfur_603, retro_mputfur_674, retro_mputfur_779,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Otolemur garnettii ENSOGAG00000025948 possible_ortholog 3 retrogenes
retro_ogar_1685, retro_ogar_3010, retro_ogar_3175,
Pongo abelii ENSPPYG00000012967 possible_ortholog 1 retrogene
retro_pabe_450,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2one 1 retrogene
retro_psin_16,
Pan troglodytes ENSPTRG00000012676 possible_ortholog 5 retrogenes
retro_ptro_1059, retro_ptro_2430, retro_ptro_2966, retro_ptro_683, retro_ptro_872,
Rattus norvegicus ENSRNOG00000001556 possible_ortholog 11 retrogenes
retro_rnor_1510, retro_rnor_1665, retro_rnor_1869, retro_rnor_2053, retro_rnor_2659, retro_rnor_2669, retro_rnor_2713, retro_rnor_2776, retro_rnor_2809, retro_rnor_348, retro_rnor_959,
Tarsius syrichta ENSTSYG00000010395 other_paralog 3 retrogenes
retro_tsyr_1092, retro_tsyr_2070, retro_tsyr_269,
Tursiops truncatus ENSTTRG00000014225 possible_ortholog 3 retrogenes
retro_ttru_1459, retro_ttru_675, retro_ttru_9,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2one 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2one 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_1480 58.88 51.85
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2. retro_tsyr_2122 64.18 52.12
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Download FASTA sequences of all ENSTSYG00000012949 retrocopies