Parental gene:

GPBP1L1, ENSSTOG00000013491

Aliases:None
Description:GC-rich promoter binding protein 1-like 1 [Source:HGNC Symbol;Acc:28843]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393284.1:26751300..26774180(-)


>ENSSTOG00000013491
ATGGCGCAGCATGACTTTGTTCCTGCTTGGCTAAATTTCTCAACACCACAGTCAGCTAAGTCACCTACATCCACCTTTGA
AAAACACGGAGAGCACCTGCCCCGAGGAGAAGGTAGATTTGGAGTGAGCCGTCGTCGACACAATTCCTCTGATGGCTTTT
TTAACAATGGGCCCCTACGAACTACAGGAGATTCCTGGCACCAGCCCTCCCTCTTCCGCCATGATTCTGTGGACTCTGGT
GTCTCTAAGGGAACATATGCTGGAATCACAGGGAACCTATCTGGTTGGCATAGTTCTTCCCGAGGTCATGATGGCATAAA
CCAGCGTAGTGGAGGTGGCACAGGGAACCATCGACACTGGAATGGCAGTTTTCATTCCCGGAAAGGCTGTGCCTTTCAAG
AAAAGCCACCTACAGAGATTAGGGAAGAAAAGAAAGAAGACAAGGTGGAAAAGTTGCAGTTTGAAGAGGAAGACTTTCCT
TCTTTGAATCCAGAAGCTGGCAAACAGAATCAGCCATGCAGACCTATTGGGACCCCTTCTGGAGTGTGGGAAAACCCACC
TAGTGCCAAGCAACCCTCCAAGATGCTAGTTATCAAAAAAGTTTCCAAAGAGGATCCTGCTGCTGCCTTCTCTGCTGCAT
TCACCTCACCAGGATCTCACCATGCAAATGGGAACAAATCATCAACTATGGTTCCAAGTGTCTATAAGAACTTGGTTCCT
AAGCCTGCACCACCTCCTTCCAAGCCCAATGCATGGAAATCTAGCAGAATGGAACACAAATCAGGATCCCTTTCCTCTAG
CCGGGAGTCATCATTTACCAATCCAATTTCTGTTACCAAACCAGTGGTACTGGCTGGTGGCACAGTTCTCAGCTCTCCCA
AAGAGAGTCCCTCCAGCATTACCCCTCCAATTGAGATCAGCTCCTCTCGTCTGACCAAGTTGACCCGCCGAACCACTGAC
AGGAAGAGTGAATTCCTGAAGACTTTGAAGGATGACCGAAATGGAGACTTTGCAGAGAACAGAGACTGTGACAAGCTGGA
GGATTTATTGCAGTTGGAAGACAACAGCACACCTGAACCAAAGGAAAATGGGGAGGAAGGCTGTCTTCAGAATGGTCTTT
CTCTCCCTGTAGTAGAAGAAGGGNAATCAATGGGATGGCAAGAATATCCTGAAAATGATGAGAATTGCCTTCCTCTCACA
GAGGATGAGCTAAAAGAGTTCCACATGAAGACAGAGCAGCTGAGAAGAAATGGCTTCGGAAAGAATGGCTTCTTACAGAG
CCGCGGTTCCAGCCTATTCTCCCCTTGGAGAAGCACTTGTAAAGCAGAGTTTGAGGACTCAGACACAGAAACAAGTAGCA
GTGAAACATCAGATGACGATGCCTGGAAGTAG

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010454 possible_ortholog 1 retrogene
retro_chof_53,
Microcebus murinus ENSMICG00000008449 ortholog_one2one 1 retrogene
retro_mmur_164,
Myotis lucifugus ENSMLUG00000012432 possible_ortholog 2 retrogenes
retro_mluc_211, retro_mluc_834,
Mus musculus ENSMUSG00000034042 ortholog_one2one 2 retrogenes
retro_mmus_1391, retro_mmus_405,
Oryctolagus cuniculus ENSOCUG00000017939 ortholog_one2one 1 retrogene
retro_ocun_427,
Otolemur garnettii ENSOGAG00000004134 ortholog_one2one 1 retrogene
retro_ogar_1859,
Ochotona princeps ENSOPRG00000001584 ortholog_one2one 1 retrogene
retro_opri_928,
Rattus norvegicus ENSRNOG00000037595 ortholog_one2many 1 retrogene
retro_rnor_390,
Ictidomys tridecemlineatus ENSSTOG00000003057 within_species_paralog 1 retrogene
retro_itri_1678,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_243 86.09 71.71
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Download FASTA sequences of all ENSSTOG00000013491 retrocopies