Parental gene:

Gpbp1l1, ENSMUSG00000034042

Aliases:Gpbp1l1, 5330440M15Rik, BC002292
Description:GC-rich promoter binding protein 1-like 1 [Source:MGI Symbol;Acc:MGI:1924360]
Organism:Mouse (Mus musculus)
Coordinates:4:116557657..116593882(+)


>ENSMUSG00000034042
ATGGCGCAGCATGACTTTGTTCCTGCTTGGCTAAATTTCTCAACGCCACAGTCATCTAAGTCATCTACAGCCACCTTTGA
CAAACACGGAGAGCACCTATCCCGTGGAGAAGGTAGATTTGGAATAAGCCGTCGTCGACATAATTCCTCTGATGGCTTTT
TTAACAATGGACCTCTACGGACTACGGGAGATTCTTGGCACCAACCCTCCCTATTCCGCCATGATTCTGTTGACTCTGGT
GTCTCTAAGGGAGCATATGCTGGAACCACAGGTTGGCATGGCTCTTCCCGAGGTCATGATGGTATGAGCCAACGTAGTGG
AGGTAGTAGTACAGGAAACCACCGACACTGGAATGGCAGCTTCCATTCCCGGAAAGGCTGCGCCTTTCAAGAAAAAACAC
CAACTGAGATTAGGGAAGAAAAGAAAGAGGATAAAGTAGAAAAGTTGCAGTTTGAAGAGGAAGACTTCCCTTCTTTGAAT
CCAGAAGCTGGCAAACAGAATCAGCCCTGCAGACCTGTTGGGACCCCTTCTGGAGTGTGGGAAAATCCACCTAGTGCCAA
GCAACCCTCAAAGATGCTAGTCATCAAAAAAATTTCCAAAGAGGATCCTGCTGCTGCCTTTTCTGCTGCATTCACCTCCT
CAGGATCCCACCATGCAAATGGGAACAAAGTGTCAACAATGGTCCCAAGTGTCTATAAGAACTTGGTGCCTAAGCCTGCA
CCACCTCCCTCTAAGCCCAACGCCTGGAAAGCTAACAGAACGGAACACAAACCTGGATCACTTTGCTCTAGCCGGGAGTC
TGCTTTCACCAATCCAATTTCTGTTACTAAACCAGTGGGACTGGCTGCTGGTGCAGGTCTCCACTCTCCCAAAGAGAGTC
CCTCCAGTACTACCCCTCCAATTGAGATCAGCTCCTCTCGTCTGACCAAATTGACCCGACGAACCACAGACAGGAAGAGT
GAGTTCCTGAAGACTCTGAAGGATGAACGAAATGGAGACTGCTCAGAAAGTAGAGACTGTGACAAGCTGGAGGGGCTAAG
ATTGGAGGGCAGCCACACACCCGAACCAAAGGAAAATGGAGAACAAGGTTGTCTTCAGAACGGTCTTTCTCTACCCATGG
TAGAGGAAGGGGAGGTTCTGTCACACTCTCTGGAAGCAGAGCACAGGTTATTAAAAGCAATGGGGTGGCAGGAGTACCCT
GAAAATGATGAGAGCTGCCTTCCACTCACAGAGGACGAGCTCAAGGAGTTCCACCTGAGAACAGAGCAGCTACGAAGAAA
TGGGTTTGGAAAGAATGGCCTCTTACAAAGCCGTAGTTGCAGCCTGTCCTCCCCGTGGAGAAGCACTTGCATTGCAGAGT
GTGAGGACTCAGACTCGGAAACGAGCAGCAGCCAGACGTCAGACGACGATGCCTGGAAGTAG

Library Parental gene expression (RPM)
SRP007412_brain 22 .05 RPM
SRP007412_cerebellum 18 .76 RPM
SRP007412_heart 30 .45 RPM
SRP007412_kidney 36 .81 RPM
SRP007412_liver 28 .78 RPM
SRP007412_testis 36 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010454 possible_ortholog 1 retrogene
retro_chof_53,
Microcebus murinus ENSMICG00000008449 ortholog_one2one 1 retrogene
retro_mmur_164,
Myotis lucifugus ENSMLUG00000012432 possible_ortholog 2 retrogenes
retro_mluc_211, retro_mluc_834,
Oryctolagus cuniculus ENSOCUG00000017939 ortholog_one2one 1 retrogene
retro_ocun_427,
Otolemur garnettii ENSOGAG00000004134 ortholog_one2one 1 retrogene
retro_ogar_1859,
Ochotona princeps ENSOPRG00000001584 ortholog_one2one 1 retrogene
retro_opri_928,
Rattus norvegicus ENSRNOG00000037595 ortholog_one2many 1 retrogene
retro_rnor_390,
Ictidomys tridecemlineatus ENSSTOG00000013491 ortholog_one2one 1 retrogene
retro_itri_243,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_405 86.83 58.35
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2. retro_mmus_1391 94.22 86.68
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Download FASTA sequences of all ENSMUSG00000034042 retrocopies