Parental gene:

GPBP1L1, ENSOCUG00000017939

Aliases:None
Description:GC-rich promoter binding protein 1-like 1 [Source:HGNC Symbol;Acc:28843]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:13:120943994..120981795(+)


>ENSOCUG00000017939
ATGGCGCAGCATGACTTTGTTCCTGCTTGGCTAAATTTCTCAACACCACAGTCAGCTAAGTCACCTACAGCCACCTTTGA
AAAACACAGAGAACATCTTCCCCGAGGAGAAGGTAGATTTGGAGTAAGCCGCCGTCGACACAATTCCTCTGATGGCTTTT
TTAACAATGGACCCCTACGAACTACAGATTCCTGGCACCAGCCCTCCCTTTTCCGCCATGATTCTGTGGACTCTGGTGTC
TCTAAAGGAGCATATGCTGGAATCACAGGGAACACATCTGGTTGGCATGGCTCTTCGCGAGGTCATCACGATGGTGTGAG
CCAGCGGAGTGGAGGTGGAGCAGGGAACCATCGACACTGGAATGGCAGCTTGCACACCCGGAAAGGCTGTGCCTTTCAGG
AAAAGCCTCCAACAGAGATTAGGGAAGAAAAGAAAGAAGACAAGGTGGAAAAACTACAATTTGAAGAGGAAGATTTTCCT
TCTTTGAATCCAGAAGCTGGCAAACAGAATCAGCCATGCAGACCTATTGGGACCCTTTCTGGAGTGTGGGAAAACCCACC
TAGTGCCAAGCAACCTTCCAAGATGTTAGTCATCAAAAAAATTTCCAAAGAGGATCCTGCTGCTGCCTTCTCTGCTGCAT
TCACTTCACCAGGATCTCACCATGCAAATGGGAACAAAGCATCAACCATGGTTCCAAGTGTCTATAAGAACTTGGTTCCT
AAGCCTGCACCACCTCCTTCCAAGCCCAATGCATGGAAAGCTAACAGATTGGAACACAAATCAGGATCCCTTTCCTCTAG
CCGGGAGTCTGCTTTTACCAGTCCAATCTCTGTTACTAAGCCAGTGGCACTGGCTGGTGCTGCAGTTCTAAACTCTCCCA
AAGAGAGTCCCTCCAGCACCACCCCTCCAATTGAGATCAGCTCCTCTCGTCTGACCAAGTTGACCCGCCGAACCACTGAC
AGGAAGAGTGAGTTCCTGAAGACTCTGAAGGATGACCGCAATGGAGACTTCTCAGAGAGCAGAGACTGTGACAAACCTGA
GGATTTGGAGGATAACAGCACACCTGAACCAAAGGAAAATGGAGAGGAAGGCTGTCATCAGAATGGTCTTTCTCTCCCTG
TAGTGGAAGAAGGGGAGGTCCTCTCACACTCCCTGGAAGCAGAGCACAGGTTACTGAAAGCAATGGGATGGCAGGAATAC
CCTGAAAATGATGAGAATTGCCTTCCCCTCACAGAAGATGAGCTCAAAGAGTTCCATATGAAGACAGAACAGCTGAGAAG
AAATGGCATCAGGAAAAATGGCTTCTTGCAGAGCCGCAGTTCCGGCCTGTTCTCCCCTTGGAGAAGCACTGTCCTGTCTC
CTGCAGACTAA

Library Parental gene expression (RPM)
SRP017611_brain 41 .89 RPM
SRP017611_kidney 65 .78 RPM
SRP017611_liver 44 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010454 possible_ortholog 1 retrogene
retro_chof_53,
Microcebus murinus ENSMICG00000008449 ortholog_one2one 1 retrogene
retro_mmur_164,
Myotis lucifugus ENSMLUG00000012432 possible_ortholog 2 retrogenes
retro_mluc_211, retro_mluc_834,
Mus musculus ENSMUSG00000034042 ortholog_one2one 2 retrogenes
retro_mmus_1391, retro_mmus_405,
Otolemur garnettii ENSOGAG00000004134 ortholog_one2one 1 retrogene
retro_ogar_1859,
Ochotona princeps ENSOPRG00000001584 ortholog_one2one 1 retrogene
retro_opri_928,
Rattus norvegicus ENSRNOG00000037595 ortholog_one2many 1 retrogene
retro_rnor_390,
Ictidomys tridecemlineatus ENSSTOG00000013491 ortholog_one2one 1 retrogene
retro_itri_243,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_427 80.54 55.70
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Download FASTA sequences of all ENSOCUG00000017939 retrocopies