Parental gene:

HDAC2, ENSSTOG00000012779

Aliases:None
Description:histone deacetylase 2 [Source:HGNC Symbol;Acc:4853]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393489.1:2449022..2474439(-)


>ENSSTOG00000012779
ATGGCGTACAGTCAAGGAGGCGGCAAGAAGAAAGTCTGCTACTACTACGACGGTGATATTGGAAATTATTATTATGGACA
GGGACATCCCATGAAACCTCATAGAATCCGCATGACTCATAACTTGCTGTTAAATTATGGTTTATACAGAAAAATGGAAA
TATATAGACCCCATAAAGCCACTGCTGAGGAAATGACAAAATATCACAGTGATGAGTATATCAAATTTCTACGGTCAATA
AGACCAGATAATATGTCTGAGTATAGTAAGCAAATGCAGAGATTCAATGTTGGAGAAGATTGTCCAGTGTTTGATGGACT
GTTTGAGTTTTGTCAGCTTTCCACTGGTGGCTCAGTTGCTGGGGCTGTGAAGCTAAACCGACAGCAAACTGATATGGCTG
TTAACTGGGCTGGAGGATTACATCATGCAAAGAAATCAGAAGCATCAGGGTTCTGTTATGTTAATGATATTGTGCTTGCC
ATCCTTGAATTACTAAAGTATCATCAGAGAGTCTTATATATTGATATAGATATCCATCATGGTGATGGTGTTGAAGAAGC
TTTTTATACAACAGATCGTGTAATGACTGTTTCATTCCATAAGTATGGGGAATACTTTCCTGGCACAGGAGACTTGAGGG
ATATTGGTGCTGGAAAAGGCAAATACTATGCTGTCAATTTTCCAATGAGAGATGGTATAGATGATGAGTCATATGGGCAA
ATATTTAAGCCTATTATCTCAAAAGTGATGGAGATGTATCAGCCAAGTGCTGTGGTATTACAGTGTGGTGCAGACTCATT
GTCTGGTGATAGGCTTGGTTGCTTCAATCTAACAGTCAAAGGTCATGCTAAATGTGTAGAAGTTGTAAAAACTTTTAACT
TACCATTACTGATGCTTGGGGGAGGAGGATACACAATCCGCAACGTTGCCCGATGCTGGACATATGAGACCGCAGTTGCC
CTTGATTGTGAGATTCCCAATGAGCTGCCATATAATGATTACTTTGAATATTTTGGACCCGACTTCAAACTGCATATTAG
TCCTTCAAACATGACAAACCAGAATACTCCAGAATATATGGAAAAGATAAAACAGCGTTTATTTGAAAATTTGCGCATGT
TACCTCATGCACCTGGTGTCCAGATGCAAGCTATTCCAGAAGATGCTGTTCATGAAGACAGTGGAGACGAAGATGGAGAA
GATCCAGACAAGAGAATTTCTATTCGAGCATCAGACAAGCGAATAGCTTGTGATGAAGAATTCTCAGATTCTGAGGATGA
AGGGGAAGGAGGGCGTAGAAATGTGGCTGATCATAAGAAAGGAGCAAAGAAAGCTAGAATTGAAGAAGACAAGAAGGAAA
CAGAGGACAAAAAAGCAGATGTTAAGGAAGAAGATAAATCCAAGGACAATAGTGGTGAAAAAACAGATACCAAAGGAGCC
AAATCGGAACAACTCAGCAACCCTTGA

Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Echinops telfairi ENSETEG00000008468 ortholog_one2many 1 retrogene
retro_etel_488,
Myotis lucifugus ENSMLUG00000003117 ortholog_one2many 4 retrogenes
retro_mluc_1570, retro_mluc_225, retro_mluc_2548, retro_mluc_935,
Monodelphis domestica ENSMODG00000017860 ortholog_one2one 1 retrogene
retro_mdom_597,
Ornithorhynchus anatinus ENSOANG00000003631 ortholog_one2one 1 retrogene
retro_oana_79,
Pan troglodytes ENSPTRG00000018519 ortholog_one2one 1 retrogene
retro_ptro_69,
Sorex araneus ENSSARG00000000354 ortholog_one2one 1 retrogene
retro_sara_651,
Ictidomys tridecemlineatus ENSSTOG00000016240 within_species_paralog 1 retrogene
retro_itri_1661,
Tarsius syrichta ENSTSYG00000009363 ortholog_one2one 4 retrogenes
retro_tsyr_1337, retro_tsyr_1355, retro_tsyr_681, retro_tsyr_765,
Tursiops truncatus ENSTTRG00000015043 ortholog_one2one 1 retrogene
retro_ttru_462,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_374 70.30 74.59
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Download FASTA sequences of all ENSSTOG00000012779 retrocopies