Parental gene:

CS, ENSSSCG00000022858

Aliases:None
Description:Citrate synthase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P00889]
Organism:Pig (Sus scrofa)
Coordinates:5:23162526..23165524(-)


>ENSSSCG00000022858
ATGCGCTTGTACCTCACCATCCACAGTGACCATGAAGGTGGCAATGTAAGTGCTCATACCAGCCATTTGGTGGGCAGTGC
CCTTTCAGACCCCTACTTGTCCTTTGCAGCAGCCATGAATGGGCTGGCAGGGCCCCTACATGGGCTGGCAAATCAGGAAG
TGCTTGTTTGGCTGACACAGCTGCAGAAGGAAGTCGGCAAAGATGTGTCAGATGAGAAGTTACGAGACTACATCTGGAAT
ACACTCAACTCAGGACGGGTTGTCCCAGGCTATGGCCACGCAGTACTAAGGAAGACTGATCCACGATATACCTGTCAAAG
AGAGTTTGCTCTGAAACACCTGCCTCATGACCCCATGTTTAAGCTGGTTGCTCAGCTGTACAAGATTGTGCCCAATGTCC
TCCTGGAACAGGGCAAGGCTAAGAATCCTTGGCCCAATGTGGATGCTCACAGTGGGGTGCTGCTCCAGTACTATGGCATG
ACGGAGATGAACTACTACACAGTCCTGTTCGGGGTATCACGGGCACTGGGTGTATTAGCACAGCTCATCTGGAGCCGAGC
CTTAGGCTTCCCTCTAGAGAGGCCCAAGTCCATGAGCACAGACGGTCTGATAAAACTTGTGGACTCTAAGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 20 .31 RPM
SRP014902_testis 20 .93 RPM
SRP018288_heart 94 .14 RPM
SRP018288_kidney 24 .92 RPM
SRP018288_liver 17 .27 RPM
SRP018288_lung 9 .88 RPM
SRP018856_adipose 169 .42 RPM
SRP035408_brain 18 .01 RPM
SRP035408_liver 10 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004371 ortholog_one2many 1 retrogene
retro_btau_386,
Canis familiaris ENSCAFG00000000115 ortholog_one2many 1 retrogene
retro_cfam_765,
Choloepus hoffmanni ENSCHOG00000000397 ortholog_one2many 1 retrogene
retro_chof_1803,
Callithrix jacchus ENSCJAG00000011275 ortholog_one2many 1 retrogene
retro_cjac_2031,
Dasypus novemcinctus ENSDNOG00000010907 ortholog_one2many 2 retrogenes
retro_dnov_205, retro_dnov_468,
Echinops telfairi ENSETEG00000012035 ortholog_one2many 1 retrogene
retro_etel_584,
Homo sapiens ENSG00000062485 ortholog_one2many 2 retrogenes
retro_hsap_1972, retro_hsap_3621,
Gorilla gorilla ENSGGOG00000009096 ortholog_one2many 2 retrogenes
retro_ggor_1432, retro_ggor_2445,
Macropus eugenii ENSMEUG00000005657 ortholog_one2many 2 retrogenes
retro_meug_1078, retro_meug_1304,
Microcebus murinus ENSMICG00000017659 ortholog_one2many 2 retrogenes
retro_mmur_1322, retro_mmur_394,
Macaca mulatta ENSMMUG00000002483 ortholog_one2many 2 retrogenes
retro_mmul_1502, retro_mmul_1840,
Mus musculus ENSMUSG00000005683 ortholog_many2many 1 retrogene
retro_mmus_258,
Nomascus leucogenys ENSNLEG00000017514 ortholog_one2many 2 retrogenes
retro_nleu_1201, retro_nleu_809,
Oryctolagus cuniculus ENSOCUG00000007216 ortholog_one2many 1 retrogene
retro_ocun_1183,
Pongo abelii ENSPPYG00000004654 ortholog_one2many 1 retrogene
retro_pabe_2972,
Rattus norvegicus ENSRNOG00000023520 ortholog_one2many 1 retrogene
retro_rnor_2518,
Sorex araneus ENSSARG00000010093 ortholog_many2many 2 retrogenes
retro_sara_360, retro_sara_628,
Sus scrofa ENSSSCG00000021091 within_species_paralog 1 retrogene
retro_sscr_321,
Tupaia belangeri ENSTBEG00000006425 ortholog_one2many 1 retrogene
retro_tbel_4652,
Tarsius syrichta ENSTSYG00000004483 ortholog_one2many 1 retrogene
retro_tsyr_1659,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_322 87.79 100.00
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Download FASTA sequences of all ENSSSCG00000022858 retrocopies