Parental gene:

CBX1, ENSSSCG00000017529

Aliases:None
Description:chromobox homolog 1 [Source:HGNC Symbol;Acc:1551]
Organism:Pig (Sus scrofa)
Coordinates:12:24228634..24250057(+)


>ENSSSCG00000017529
ATGGGGAAAAAACAAAACAAGAAGAAAGTGGAAGAGGTGCTAGAAGAAGAGGAAGAAGAATATGTGGTAGAAAAAGTTCT
TGACCGCCGAGTGGTAAAGGGCAAAGTGGAGTACCTCCTGAAGTGGAAGGGGTTCTCAGATGAGGACAATACATGGGAGC
CAGAAGAGAACCTGGATTGCCCTGACCTCATTGCTGAGTTTCTGCAGTCGCAGAAAACAGCCCATGAGACAGATAAATCA
GAGGGAGGCAAGCGCAAGGCTGATTCTGATTCAGAAGATAAAGGGGAGGAGAGCAAACCAAAGAAGAAGAAAGAAGAGTC
AGAAAAGCCACGAGGCTTTGCCCGGGGGTTGGAGCCGGAGCGGATTATTGGAGCTACAGACTCCAGTGGAGAACTCATGT
TCCTGATGAAATGGAAAAACTCTGATGAGGCTGACCTAGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTC
ATATCCTTCTATGAGGAAAGGCTGACGTGGCATTCCTACCCCTCGGAGGATGATGACAAAAAAGATGACAAGAATTAA

Library Parental gene expression (RPM)
SRP014902_placenta 12 .34 RPM
SRP014902_testis 71 .43 RPM
SRP018288_heart 42 .88 RPM
SRP018288_kidney 61 .86 RPM
SRP018288_liver 34 .70 RPM
SRP018288_lung 41 .65 RPM
SRP018856_adipose 69 .62 RPM
SRP035408_brain 141 .37 RPM
SRP035408_liver 45 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004890 ortholog_one2one 2 retrogenes
retro_amel_1228, retro_amel_54,
Canis familiaris ENSCAFG00000016832 ortholog_one2one 1 retrogene
retro_cfam_804,
Choloepus hoffmanni ENSCHOG00000011957 ortholog_one2one 2 retrogenes
retro_chof_1860, retro_chof_2185,
Callithrix jacchus ENSCJAG00000007532 ortholog_one2many 2 retrogenes
retro_cjac_191, retro_cjac_51,
Felis catus ENSFCAG00000006056 ortholog_one2one 1 retrogene
retro_fcat_514,
Homo sapiens ENSG00000108468 ortholog_one2one 3 retrogenes
retro_hsap_4654, retro_hsap_4790, retro_hsap_4840,
Gorilla gorilla ENSGGOG00000024063 ortholog_one2one 3 retrogenes
retro_ggor_2887, retro_ggor_3019, retro_ggor_330,
Microcebus murinus ENSMICG00000009510 ortholog_one2one 4 retrogenes
retro_mmur_1324, retro_mmur_178, retro_mmur_467, retro_mmur_999,
Mustela putorius furo ENSMPUG00000015302 ortholog_one2one 1 retrogene
retro_mputfur_1457,
Nomascus leucogenys ENSNLEG00000002435 ortholog_one2one 4 retrogenes
retro_nleu_1089, retro_nleu_1105, retro_nleu_1955, retro_nleu_2961,
Oryctolagus cuniculus ENSOCUG00000008021 possible_ortholog 3 retrogenes
retro_ocun_177, retro_ocun_442, retro_ocun_55,
Procavia capensis ENSPCAG00000002381 ortholog_one2one 2 retrogenes
retro_pcap_134, retro_pcap_308,
Pongo abelii ENSPPYG00000008891 ortholog_one2many 1 retrogene
retro_pabe_78,
Sarcophilus harrisii ENSSHAG00000008192 ortholog_one2one 1 retrogene
retro_shar_76,
Sus scrofa ENSSSCG00000016711 within_species_paralog 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,
Tupaia belangeri ENSTBEG00000014931 ortholog_one2one 39 retrogenes
retro_tbel_1388, retro_tbel_1557, retro_tbel_1613, retro_tbel_1655, retro_tbel_1663, retro_tbel_1794, retro_tbel_2124, retro_tbel_2130, retro_tbel_2281, retro_tbel_2313, retro_tbel_2346, retro_tbel_2539, retro_tbel_2559, retro_tbel_2571, retro_tbel_2587, retro_tbel_270, retro_tbel_2713, retro_tbel_2716, retro_tbel_2752, retro_tbel_2809, retro_tbel_2835, retro_tbel_2854, retro_tbel_2926, retro_tbel_2993, retro_tbel_303, retro_tbel_3236, retro_tbel_3370, retro_tbel_3685, retro_tbel_3998, retro_tbel_4032, retro_tbel_4202, retro_tbel_4611, retro_tbel_4630, retro_tbel_484, retro_tbel_558, retro_tbel_687, retro_tbel_792, retro_tbel_793, retro_tbel_938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_635 83.58 72.43
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Download FASTA sequences of all ENSSSCG00000017529 retrocopies