Parental gene:

ENSSSCG00000005169

Aliases:None
Description:40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:F2Z5Q6]
Organism:Pig (Sus scrofa)
Coordinates:1:227094944..227098140(+)


>ENSSSCG00000005169
TTGAACATCTCTTTCCCGGCCACTGGCTGCCAAAAACTCATTGAAGTGGACGATGAGCGAAAACTTCGTACATTTTATGA
GAAACGCATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTGGTGGGA
ACGACAAACAAGGATTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGAGTCCGCCTGCTACTGAGTAAGGGGCATTCC
TGTTACAGACCAAGGAGGACTGGAGAAAGAAAGCGCAAATCAGTTCGGGGTTGCATTGTGGATGCCAATCTAAGTGTTCT
CAATTTGGTCATCGTAAAAAAAGGGGAGAAGGATATTCCTGGACTCACCGATACCACTGTGCCTCGCCGCCTGGGGCCTA
AAAGAGCTAGCAGGATCCGCAAACTTTTCAATCTCTCTAAGGAAGACGATGTCCGTCAGTATGTAGTGAGAAAGCCCCTA
AACAAAGAAGGAAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTTCTGCAACACAAACG
TCGCCGTATTGCTCTGAAGAAACAACGTACCAAGAAAAATAAGGAAGAGGCTGCAGAATATGCTAAACTTTTGGCCAAGA
GAATGAAGGAGGCCAAAGAAAAACGTCAGGAACAGATTGCCAAGAGACGGAGGCTATCCTCTCTGAGAGCATCTACCTCT
AAGTCTGAGTCCAGTCAAAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 588 .80 RPM
SRP014902_testis 637 .50 RPM
SRP018288_heart 741 .67 RPM
SRP018288_kidney 539 .22 RPM
SRP018288_liver 510 .91 RPM
SRP018288_lung 379 .81 RPM
SRP018856_adipose 2012 .73 RPM
SRP035408_brain 937 .54 RPM
SRP035408_liver 1350 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Ailuropoda melanoleuca ENSAMEG00000002925 ortholog_one2one 14 retrogenes
retro_amel_1040, retro_amel_1250, retro_amel_1384, retro_amel_1526, retro_amel_1646, retro_amel_1676, retro_amel_189, retro_amel_312, retro_amel_334, retro_amel_382, retro_amel_510, retro_amel_568, retro_amel_657, retro_amel_841,
Canis familiaris ENSCAFG00000001615 possible_ortholog 4 retrogenes
retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Callithrix jacchus ENSCJAG00000020612 possible_ortholog 6 retrogenes
retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus ENSDNOG00000007241 ortholog_one2many 1 retrogene
retro_dnov_1192,
Equus caballus ENSECAG00000016190 ortholog_one2one 5 retrogenes
retro_ecab_175, retro_ecab_312, retro_ecab_603, retro_ecab_771, retro_ecab_861,
Ficedula albicollis ENSFALG00000003078 possible_ortholog 1 retrogene
retro_falb_24,
Felis catus ENSFCAG00000002541 ortholog_one2one 26 retrogenes
retro_fcat_1082, retro_fcat_1108, retro_fcat_1154, retro_fcat_1262, retro_fcat_1373, retro_fcat_1642, retro_fcat_1679, retro_fcat_1760, retro_fcat_1791, retro_fcat_1934, retro_fcat_1937, retro_fcat_1963, retro_fcat_198, retro_fcat_238, retro_fcat_328, retro_fcat_358, retro_fcat_380, retro_fcat_392, retro_fcat_493, retro_fcat_659, retro_fcat_738, retro_fcat_750, retro_fcat_850, retro_fcat_894, retro_fcat_912, retro_fcat_968,
Gorilla gorilla ENSGGOG00000002652 ortholog_one2one 13 retrogenes
retro_ggor_1430, retro_ggor_1703, retro_ggor_2097, retro_ggor_2358, retro_ggor_2439, retro_ggor_2769, retro_ggor_2863, retro_ggor_2864, retro_ggor_616, retro_ggor_670, retro_ggor_777, retro_ggor_896, retro_ggor_965,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Macaca mulatta ENSMMUG00000003412 ortholog_one2one 1 retrogene
retro_mmul_263,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Rattus norvegicus ENSRNOG00000049025 ortholog_one2one 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
retro_shar_549,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_187 79.73 59.51
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2. retro_sscr_425 72.29 65.18
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3. retro_sscr_645 52.91 67.61
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4. retro_sscr_856 79.13 91.90
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5. retro_sscr_940 86.29 100.00
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6. retro_sscr_983 93.57 100.00
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Download FASTA sequences of all ENSSSCG00000005169 retrocopies