Parental gene:

SFT2D1, ENSSSCG00000004020

Aliases:None
Description:SFT2 domain containing 1 [Source:HGNC Symbol;Acc:21102]
Organism:Pig (Sus scrofa)
Coordinates:1:3716400..3734041(+)


>ENSSSCG00000004020
ATGGAGAAGCTGCGGCGGGTCCTGAGCGGCCAGGACGACGAGGAGCAGGGCCTGACTGCGCAGGTCCTGGATGCCTCGAC
CCTTAGTTTCAACACCAGGCTGAAGTGGTTCGTCATATGCTTCGTAAGCGGCATCTTCTTCTCTTTTCTTGGAACTGGAT
TGCTGTGGCTTCCTGGTGGCATAAAGCTTTTTGCAGTATTTTATACCTTTGGAAATATTGCTGCCTTAGCCAGTACTTGC
TTTTTAATGGGCCCCGTGAAGCAGCTCAAGAAGATGTTCGAAACGACGCGGTTGCTGGCGACGATTGTAATGATCTTGTG
TTTGGTACTTACCCTGTGTGCTGCTCTTTGGTGGCGCAAGAAGGGACTGGCCTTATTATTCTGCATATTGCAGTTCTTGT
CGCTGACCTGGTACAGTCTCTCCTACATCCCGTACGCACGGGATGCAGTAATTAAATGCTGTTCTTCTCTCCTGAGTTGA

Library Parental gene expression (RPM)
SRP014902_placenta 33 .98 RPM
SRP014902_testis 18 .53 RPM
SRP018288_heart 18 .47 RPM
SRP018288_kidney 64 .03 RPM
SRP018288_liver 23 .51 RPM
SRP018288_lung 26 .37 RPM
SRP018856_adipose 53 .63 RPM
SRP035408_brain 6 .35 RPM
SRP035408_liver 8 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009311 ortholog_one2one 3 retrogenes
retro_amel_1244, retro_amel_1452, retro_amel_374,
Bos taurus ENSBTAG00000002993 ortholog_one2one 5 retrogenes
retro_btau_1458, retro_btau_1460, retro_btau_31, retro_btau_546, retro_btau_900,
Canis familiaris ENSCAFG00000000811 ortholog_one2one 2 retrogenes
retro_cfam_283, retro_cfam_551,
Equus caballus ENSECAG00000019479 ortholog_one2one 1 retrogene
retro_ecab_1029,
Mus musculus ENSMUSG00000073468 ortholog_one2many 1 retrogene
retro_mmus_164,
Oryctolagus cuniculus ENSOCUG00000001200 ortholog_one2one 1 retrogene
retro_ocun_1492,
Otolemur garnettii ENSOGAG00000006302 ortholog_one2one 1 retrogene
retro_ogar_1601,
Ochotona princeps ENSOPRG00000003408 ortholog_one2one 2 retrogenes
retro_opri_37, retro_opri_809,
Pongo abelii ENSPPYG00000017165 ortholog_one2many 1 retrogene
retro_pabe_181,
Tupaia belangeri ENSTBEG00000000045 ortholog_one2one 2 retrogenes
retro_tbel_3277, retro_tbel_747,
Tursiops truncatus ENSTTRG00000004447 ortholog_one2one 2 retrogenes
retro_ttru_1353, retro_ttru_624,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_751 53.47 89.31
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Download FASTA sequences of all ENSSSCG00000004020 retrocopies