Parental gene:

HMGN2, ENSSSCG00000003555

Aliases:HMGN2, HMG17
Description:Sus scrofa high mobility group nucleosomal binding domain 2 (HMGN2), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001244112]
Organism:Pig (Sus scrofa)
Coordinates:6:77402712..77406199(+)


>ENSSSCG00000003555
ATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAAGGGGATAAAGCCAAGGTGAAGGACGAACCACAGAGAAGATCTGCGAG
GTTATCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCA
AAGGGAAAAAGGGGAAAGCCGATGCTGGCAAGGATGGGAATAACCCTGCAGAAAATGGAGATGCCAAAACAGACCAGGCA
CAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 67 .29 RPM
SRP014902_testis 249 .37 RPM
SRP018288_heart 134 .50 RPM
SRP018288_kidney 204 .60 RPM
SRP018288_liver 99 .94 RPM
SRP018288_lung 150 .50 RPM
SRP018856_adipose 151 .03 RPM
SRP035408_brain 83 .09 RPM
SRP035408_liver 128 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000038104 ortholog_one2one 7 retrogenes
retro_btau_1041, retro_btau_1160, retro_btau_1200, retro_btau_1292, retro_btau_1297, retro_btau_1684, retro_btau_482,
Canis familiaris ENSCAFG00000023168 ortholog_one2one 35 retrogenes
retro_cfam_1043, retro_cfam_1188, retro_cfam_1314, retro_cfam_1360, retro_cfam_1519, retro_cfam_1546, retro_cfam_1593, retro_cfam_1606, retro_cfam_1629, retro_cfam_1681, retro_cfam_1708, retro_cfam_1784, retro_cfam_1989, retro_cfam_2060, retro_cfam_2097, retro_cfam_2133, retro_cfam_266, retro_cfam_317, retro_cfam_324, retro_cfam_351, retro_cfam_353, retro_cfam_38, retro_cfam_381, retro_cfam_410, retro_cfam_446, retro_cfam_538, retro_cfam_623, retro_cfam_628, retro_cfam_705, retro_cfam_745, retro_cfam_783, retro_cfam_795, retro_cfam_821, retro_cfam_845, retro_cfam_860,
Echinops telfairi ENSETEG00000013571 ortholog_one2one 33 retrogenes
retro_etel_1035, retro_etel_1097, retro_etel_1210, retro_etel_1253, retro_etel_1282, retro_etel_1298, retro_etel_1314, retro_etel_1346, retro_etel_1398, retro_etel_1582, retro_etel_165, retro_etel_1690, retro_etel_1710, retro_etel_178, retro_etel_1836, retro_etel_1845, retro_etel_1939, retro_etel_1945, retro_etel_1951, retro_etel_1961, retro_etel_2079, retro_etel_253, retro_etel_292, retro_etel_298, retro_etel_446, retro_etel_481, retro_etel_505, retro_etel_511, retro_etel_571, retro_etel_61, retro_etel_768, retro_etel_819, retro_etel_881,
Felis catus ENSFCAG00000012812 possible_ortholog 3 retrogenes
retro_fcat_1842, retro_fcat_4, retro_fcat_530,
Macropus eugenii ENSMEUG00000010966 possible_ortholog 8 retrogenes
retro_meug_1178, retro_meug_126, retro_meug_1859, retro_meug_1910, retro_meug_1997, retro_meug_248, retro_meug_369, retro_meug_76,
Mus musculus ENSMUSG00000003038 possible_ortholog 2 retrogenes
retro_mmus_202, retro_mmus_2582,
Pteropus vampyrus ENSPVAG00000017269 ortholog_one2one 5 retrogenes
retro_pvam_1046, retro_pvam_1059, retro_pvam_1065, retro_pvam_379, retro_pvam_4,
Sorex araneus ENSSARG00000013139 ortholog_one2one 3 retrogenes
retro_sara_12, retro_sara_17, retro_sara_176,
Tupaia belangeri ENSTBEG00000016632 ortholog_one2one 33 retrogenes
retro_tbel_1351, retro_tbel_16, retro_tbel_1844, retro_tbel_21, retro_tbel_2219, retro_tbel_2498, retro_tbel_2670, retro_tbel_3050, retro_tbel_309, retro_tbel_3101, retro_tbel_3112, retro_tbel_3121, retro_tbel_3149, retro_tbel_320, retro_tbel_3413, retro_tbel_3462, retro_tbel_36, retro_tbel_389, retro_tbel_4058, retro_tbel_417, retro_tbel_4469, retro_tbel_448, retro_tbel_4615, retro_tbel_4644, retro_tbel_475, retro_tbel_50, retro_tbel_538, retro_tbel_62, retro_tbel_65, retro_tbel_66, retro_tbel_704, retro_tbel_732, retro_tbel_757,
Tursiops truncatus ENSTTRG00000005681 possible_ortholog 5 retrogenes
retro_ttru_1392, retro_ttru_1443, retro_ttru_3, retro_ttru_345, retro_ttru_788,
Vicugna pacos ENSVPAG00000008076 ortholog_one2one 1 retrogene
retro_vpac_183,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_66 83.33 100.00
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2. retro_sscr_573 84.85 73.33
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3. retro_sscr_985 80.22 98.89
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Download FASTA sequences of all ENSSSCG00000003555 retrocopies