Parental gene:

Hmgn1, ENSRNOG00000048226

Aliases:None
Description:high-mobility group nucleosome binding domain 1 [Source:RefSeq peptide;Acc:NP_001013202]
Organism:Rat (Rattus norvegicus)
Coordinates:11:42691941..42697860(+)


>ENSRNOG00000048226
ATGCCCAAGAGGAAGGTTAGCGCAGATGGAGCGGCGAAGGCGGAGCCCAAGCGCCGCTCCGCGAGGCTGTCGGCCAAGCC
CGCCCCTGCCAAGGTGGACGCGAAACCGAAAAAGGCCGCGGGAAAGGATAAAGCATCAGACAAAAAAGCACAGATAAAAG
GGAAGAGGGGAGCGAAGGGCAAACAGGCTGAAGTGGCTGACCAGCAAACTACAGATCTGCCTGCAGAAAATGGAGAGACG
GAAAACCAGAGTCCAGCCTCTGAGGAAGAGAAAGAAGCGAAGTCTGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 0 .00 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_liver 0 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000002336 possible_ortholog 7 retrogenes
retro_cpor_1129, retro_cpor_1389, retro_cpor_334, retro_cpor_349, retro_cpor_4, retro_cpor_884, retro_cpor_949,
Monodelphis domestica ENSMODG00000020972 ortholog_many2many 5 retrogenes
retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Mustela putorius furo ENSMPUG00000008550 possible_ortholog 3 retrogenes
retro_mputfur_252, retro_mputfur_371, retro_mputfur_483,
Mus musculus ENSMUSG00000040681 ortholog_one2many 13 retrogenes
retro_mmus_1274, retro_mmus_1295, retro_mmus_1445, retro_mmus_1565, retro_mmus_1574, retro_mmus_1636, retro_mmus_2166, retro_mmus_2195, retro_mmus_2895, retro_mmus_3117, retro_mmus_3641, retro_mmus_832, retro_mmus_949,
Rattus norvegicus ENSRNOG00000050978 within_species_paralog 5 retrogenes
retro_rnor_1057, retro_rnor_1318, retro_rnor_1389, retro_rnor_2433, retro_rnor_358,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_642 75.51 100.00
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2. retro_rnor_764 76.67 89.58
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3. retro_rnor_966 77.32 100.00
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4. retro_rnor_1020 84.85 68.75
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5. retro_rnor_1239 60.24 85.42
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6. retro_rnor_1290 59.60 100.00
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7. retro_rnor_2643 65.48 85.42
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8. retro_rnor_2667 68.04 100.00
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Download FASTA sequences of all ENSRNOG00000048226 retrocopies