Parental gene:

Hmgn1, ENSMUSG00000040681

Aliases:None
Description:high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
Organism:Mouse (Mus musculus)
Coordinates:16:96120617..96127729(-)


>ENSMUSG00000040681
ATGCCCAAGAGGAAGGTTAGCGCGGATGGAGCCGCCAAGGCGGAGCCCAAGCGCCGCTCCGCGAGGCTGTCGGCCAAGCC
CGCCCCTGCCAAGGTGGACGCGAAGCCGAAAAAGGCCGCGGGAAAGGATAAAGCATCAGACAAAAAAGTGCAGATAAAAG
GGAAGAGGGGAGCGAAGGGCAAACAGGCTGACGTGGCTGACCAGCAAACCACAGAGCTGCCTGCAGAAAATGGAGAGACG
GAAAACCAGAGTCCAGCCTCTGAAGAAGAGAAAGAAGCTAAGTCCGACTAA

Library Parental gene expression (RPM)
SRP007412_brain 27 .59 RPM
SRP007412_cerebellum 26 .14 RPM
SRP007412_heart 21 .23 RPM
SRP007412_kidney 50 .01 RPM
SRP007412_liver 36 .43 RPM
SRP007412_testis 25 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000002336 possible_ortholog 7 retrogenes
retro_cpor_1129, retro_cpor_1389, retro_cpor_334, retro_cpor_349, retro_cpor_4, retro_cpor_884, retro_cpor_949,
Monodelphis domestica ENSMODG00000020972 ortholog_one2many 5 retrogenes
retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Rattus norvegicus ENSRNOG00000048226 ortholog_one2many 8 retrogenes
retro_rnor_1020, retro_rnor_1239, retro_rnor_1290, retro_rnor_2643, retro_rnor_2667, retro_rnor_642, retro_rnor_764, retro_rnor_966,
Rattus norvegicus ENSRNOG00000050978 ortholog_one2many 5 retrogenes
retro_rnor_1057, retro_rnor_1318, retro_rnor_1389, retro_rnor_2433, retro_rnor_358,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_832 84.69 100.00
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2. retro_mmus_949 97.94 100.00
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3. retro_mmus_1274 55.67 97.92
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4. retro_mmus_1295 54.55 80.21
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5. retro_mmus_1445 78.48 82.29
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6. retro_mmus_1565 79.17 96.88
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7. retro_mmus_1574 88.51 89.58
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8. retro_mmus_1636 76.74 87.50
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9. retro_mmus_2166 93.81 100.00
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10. retro_mmus_2195 72.73 100.00
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11. retro_mmus_2895 72.41 97.67
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12. retro_mmus_3117 68.24 87.50
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13. retro_mmus_3641 94.85 100.00
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Download FASTA sequences of all ENSMUSG00000040681 retrocopies