Parental gene:

Oxct1, ENSRNOG00000043094

Aliases:Oxct1, SCOT
Description:Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:B2GV06]
Organism:Rat (Rattus norvegicus)
Coordinates:2:72891712..73037614(+)


>ENSRNOG00000043094
ATGGCGGCTCTTAAACTCTTGTCCTCCGGGCTTCGGCTCTGCGCCTCCGCCCGCAACTCGCGGGGCGCCCTGCACAAGGG
GTGTGCCTGCTACTTTTCCGTCAGTACTCGTCACCACACCAAATTTTACACAGATCCCGTGGAAGCTGTAAAAGATATTC
CTAATGGTGCAACCTTGCTGGTTGGTGGTTTCGGGTTGTGTGGTATTCCAGAGAATCTCATAGGAGCTTTGCTGAAGACC
GGAGTGAAGGATCTAACTGCAGTCAGCAACAATGCAGGGGTTGACAACTTCGGCCTGGGCCTTTTACTTCGATCTAAGCA
GATAAAACGCATGATCTCCTCATATGTGGGAGAAAACGCAGAGTTTGAGCGACAGTTCTTATCGGGTGAACTAGAAGTAG
AGCTGACACCTCAGGGCACTCTTGCAGAGAGGATCCGTGCAGGTGGGGCTGGCGTCCCTGCCTTCTACACCAGCACAGGG
TATGGGACCCTGGTGCAAGAGGGAGGATCACCCATCAAATATAACAAAGATGGCAGTGTTGCCATTGCCAGCAAGCCACG
AGAGGTGAGGGAGTTCCGCGGTCAGCACTTTATTTTGGAGGAAGCCATCACGGGAGACTTTGCTTTGGTGAAGGCCTGGA
AAGCAGACCGGGCAGGAAATGTGATTTTCAGGAAAAGTGCAAGAAACTTCAATTTGCCAATGTGCAAAGCTGCAGGAACC
ACAGTGGTGGAGGTTGAAGAAATTGTAGACATTGGCTCGTTTGCTCCAGAAGATATCCACATTCCCAAGATTTATGTGCA
CCGCCTTATAAAGGGAGAGAAATATGAGAAGAGAATCGAGCGTTTATCACTGCGAAAGGAAGGTGAAGGAAAAGCCAAGT
CTGGTAAGCCCGGAGAAGACGTCAGGGAGCGGATCATCAAGAGAGCCGCTCTTGAGTTTGAGGATGGCATGTATGCTAAC
CTGGGTATAGGGATACCTCTTCTGGCCAGCAACTTTATCAGCCCAAACATGACTGTTCATCTCCAAAGTGAAAATGGAGT
CTTGGGCTTGGGCCCATACCCACTAAAAGACGAAGCTGATGCTGACCTCATCAATGCAGGAAAGGAAACGGTTACTGTTC
TCCCAGGAGCCTCTTTCTTCTCCAGCGATGAATCATTCGCCATGATTAGAGGGGGACACGTCAATCTAACGATGTTAGGA
GCCATGCAGGTTTCTAAATATGGTGACTTGGCCAACTGGATGATACCTGGGAAAATGGTGAAAGGAATGGGAGGAGCTAT
GGATTTAGTGTCCAGTTCCAAAACCAAAGTGGTGGTCACCATGGAACACTCCGCAAAGGGGAATGCGCATAAAATCATGG
AGAAGTGTACACTACCACTGACAGGAAAGCAGTGCGTCAACCGCATCATTACAGAAAAGGGTGTGTTTGACGTGGACAAG
AAAAACGGGTTGACATTGATCGAGCTTTGGGAAGGCCTGACTGTTGATGACATCAGGAAGAGCACAGGCTGTGACTTTGC
AGTTTCACCAAACCTCATGCCAATGCAGCAGATCTCAACTTGA

Library Parental gene expression (RPM)
SRP017611_brain 182 .83 RPM
SRP017611_kidney 1095 .65 RPM
SRP017611_liver 2 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033186 ortholog_one2one 2 retrogenes
retro_btau_1243, retro_btau_1302,
Dipodomys ordii ENSDORG00000016318 ortholog_one2one 1 retrogene
retro_dord_282,
Equus caballus ENSECAG00000018312 ortholog_one2one 1 retrogene
retro_ecab_511,
Homo sapiens ENSG00000083720 ortholog_one2one 1 retrogene
retro_hsap_14,
Gorilla gorilla ENSGGOG00000025087 ortholog_one2one 1 retrogene
retro_ggor_378,
Myotis lucifugus ENSMLUG00000009431 ortholog_one2many 1 retrogene
retro_mluc_194,
Nomascus leucogenys ENSNLEG00000016656 ortholog_one2one 1 retrogene
retro_nleu_2438,
Oryctolagus cuniculus ENSOCUG00000009231 ortholog_one2one 1 retrogene
retro_ocun_672,
Otolemur garnettii ENSOGAG00000009909 ortholog_one2one 2 retrogenes
retro_ogar_2773, retro_ogar_2781,
Pongo abelii ENSPPYG00000015428 ortholog_one2one 2 retrogenes
retro_pabe_336, retro_pabe_478,
Pan troglodytes ENSPTRG00000016829 ortholog_one2one 1 retrogene
retro_ptro_140,
Ictidomys tridecemlineatus ENSSTOG00000008271 ortholog_one2one 1 retrogene
retro_itri_747,
Tarsius syrichta ENSTSYG00000013641 ortholog_one2one 1 retrogene
retro_tsyr_1455,
Tursiops truncatus ENSTTRG00000004331 ortholog_one2one 1 retrogene
retro_ttru_875,
Vicugna pacos ENSVPAG00000002550 ortholog_one2one 1 retrogene
retro_vpac_556,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2177 66.35 100.00
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2. retro_rnor_2256 66.35 100.00
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Download FASTA sequences of all ENSRNOG00000043094 retrocopies