Parental gene:

OXCT1, ENSBTAG00000033186

Aliases:None
Description:succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial [Source:RefSeq peptide;Acc:NP_001069538]
Organism:Cow (Bos taurus)
Coordinates:20:32683995..32848723(+)


>ENSBTAG00000033186
ATGGCAGCTCTCGCACGCCTCTCCTCGCGCCTGCGGTTCTGCGCCTCCGCCCTCTCCTCAGCGGGCGTCTGGTCCAAGGG
ATGTATTTGCTACTTTTCAACTAGCACACGTCACCATACCAAATTTTATACAGACCCAGTGGAAGCGGTAAAAGACATTC
CTGATGGTGCAACAATACTGGTTGGTGGTTTTGGGTTATGTGGAATTCCAGAGAATCTTATAGGAGCTTTGCTAAAGACT
GGAGTAAAAGGACTAACTGCAGTCAGCAACAATGCTGGGGTTGACAACTTTGGTTTGGGCCTTTTACTTAGATCCAAGCA
GATAAAACGCATGGTCTCTTCCTATGTGGGAGAAAATGCAGAATTTGAGCGACAGTATTTATCTGGCGAATTAGAAGTAG
AGCTGACACCACAGGGCACGCTTGCAGAGAGGATTCGTGCAGGTGGGGCTGGAGTTCCTGCATTTTACACCAGCACAGGG
TATGGGACCCTGGTGCAAGAAGGGGGGTCACCAATCAAATACAACAAAGATGGCAGCATTGCCATTGCCAGTAAGCCGAG
AGAGGTGAGGGAGTTTAAAGGTCAGCATTTTATCTTGGAGGAAGCAATCACAGGGGATTTTGCTTTGGTGAAAGCCTGGA
AGGCAGATCGAGCCGGAAACGTGATTTTCAGGAAAAGTGCAAGGAATTTCAACTTGCCGATGTGCAAAGCTGCAGAAACC
ACAGTGGTGGAGGTTGAAGAAATTGTCGATATTGGATCATTTGCTCCAGAAGACATTCATATTCCTAAGATTTATGTACA
TCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGCGTTTATCAATCCGGAAAGAGGAAGATATAAAAACCACAT
CTGGTAAACCTGGAGATAATGTCAGGGAACGTATCATCAAGCGGGCAGCTCTTGAATTTGAGGACGGCATGTATGCCAAT
TTGGGCATAGGAATACCACTTCTGGCCAGCAACTATATCAGCCCCGATATGACTGTCCATCTGCAAAGTGAAAATGGAGT
CCTGGGTTTGGGTCCATACCCATTAAAAAATGAAGTTGATGCAGATCTAATCAATGCAGGCAAGGAAACAGTTACTGTTC
TTCCAGGAGCCTCTTATTTCTCCAGTGATGAATCATTTGCAATGATTAGAGGGGGACATGTCAATCTGACAATGCTAGGA
GCCATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATACCTGGAAAGATGGTGAAAGGAATGGGAGGGGCTAT
GGATCTAGTGTCCAGTGCCAGAACCAAAGTAGTGGTCACCATGGAACATTCTGCAAAGGGAAATGCACATAAAATCATGG
AGAAATGTACATTACCTCTAACAGGAAAGCAGTGTGTCAACCGTATCATTACTGAAAAGGCTGTGTTTGATGTGGACAGC
AAAAAGGGTCTGACTCTTATTGAACTCTGGGAAGGCCTGACAGTGGATGACATAAAAAAGAGCACTGGGTGTGATTTCAC
AGTTTCACCAAAACTCATACCAATGCGGCAGATCTCAACTTGA

Library Parental gene expression (RPM)
ERP005899_liver 1 .59 RPM
ERP005899_muscle 48 .09 RPM
SRP017611_brain 20 .05 RPM
SRP017611_kidney 732 .95 RPM
SRP017611_liver 1 .96 RPM
SRP030211_testis 11 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000016318 ortholog_one2one 1 retrogene
retro_dord_282,
Equus caballus ENSECAG00000018312 ortholog_one2one 1 retrogene
retro_ecab_511,
Homo sapiens ENSG00000083720 ortholog_one2one 1 retrogene
retro_hsap_14,
Gorilla gorilla ENSGGOG00000025087 ortholog_one2one 1 retrogene
retro_ggor_378,
Myotis lucifugus ENSMLUG00000009431 ortholog_one2many 1 retrogene
retro_mluc_194,
Nomascus leucogenys ENSNLEG00000016656 ortholog_one2one 1 retrogene
retro_nleu_2438,
Oryctolagus cuniculus ENSOCUG00000009231 ortholog_one2one 1 retrogene
retro_ocun_672,
Otolemur garnettii ENSOGAG00000009909 ortholog_one2one 2 retrogenes
retro_ogar_2773, retro_ogar_2781,
Pongo abelii ENSPPYG00000015428 ortholog_one2one 2 retrogenes
retro_pabe_336, retro_pabe_478,
Pan troglodytes ENSPTRG00000016829 ortholog_one2one 1 retrogene
retro_ptro_140,
Rattus norvegicus ENSRNOG00000043094 ortholog_one2one 2 retrogenes
retro_rnor_2177, retro_rnor_2256,
Ictidomys tridecemlineatus ENSSTOG00000008271 ortholog_one2one 1 retrogene
retro_itri_747,
Tarsius syrichta ENSTSYG00000013641 ortholog_one2one 1 retrogene
retro_tsyr_1455,
Tursiops truncatus ENSTTRG00000004331 ortholog_one2one 1 retrogene
retro_ttru_875,
Vicugna pacos ENSVPAG00000002550 ortholog_one2one 1 retrogene
retro_vpac_556,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1243 73.94 99.62
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_btau_1302 77.36 91.73
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSBTAG00000033186 retrocopies