Parental gene:

Atp5l, ENSRNOG00000028884

Aliases:None
Description:ATP synthase subunit g, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6PDU7]
Organism:Rat (Rattus norvegicus)
Coordinates:8:47838600..47845456(-)


>ENSRNOG00000028884
ATGGCCAAGTTCATCCGTAACCTCGCGGACAAGGCACCGTCGATGGTGGCGGCTGCCGTGACTTACTCGAAGCCTCGATT
GGCCACATTTTGGCACTATGCTAGGGTTGAGCTGGTTCCCCCAACCCTTGGTGAAATCCCTACAGCTATTCAGAGCATGA
AAAGTATAATTCACAGTGCCCAAACTGGTAACTTCAAACACCTCACAGTTAAGGAAGCTGTGCTGAATGGTTTGGTGGCC
ACTGAGGTGTGGATGTGGTTTTATATCGGAGAGATCATAGGCAAACGTGGCATTGTTGGCTATGATGTTTGA

Library Parental gene expression (RPM)
SRP017611_brain 70 .67 RPM
SRP017611_kidney 139 .08 RPM
SRP017611_liver 61 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007332 ortholog_one2many 2 retrogenes
retro_btau_105, retro_btau_245,
Choloepus hoffmanni ENSCHOG00000010589 ortholog_one2one 3 retrogenes
retro_chof_1454, retro_chof_1865, retro_chof_2204,
Callithrix jacchus ENSCJAG00000013281 ortholog_one2many 1 retrogene
retro_cjac_283,
Dasypus novemcinctus ENSDNOG00000019354 ortholog_one2one 5 retrogenes
retro_dnov_1491, retro_dnov_1872, retro_dnov_2169, retro_dnov_2341, retro_dnov_344,
Equus caballus ENSECAG00000023715 ortholog_one2one 1 retrogene
retro_ecab_434,
Erinaceus europaeus ENSEEUG00000009863 ortholog_one2one 7 retrogenes
retro_eeur_106, retro_eeur_111, retro_eeur_333, retro_eeur_495, retro_eeur_499, retro_eeur_589, retro_eeur_606,
Echinops telfairi ENSETEG00000008755 ortholog_one2one 11 retrogenes
retro_etel_1239, retro_etel_166, retro_etel_1884, retro_etel_1885, retro_etel_2183, retro_etel_241, retro_etel_254, retro_etel_355, retro_etel_822, retro_etel_876, retro_etel_995,
Felis catus ENSFCAG00000011782 possible_ortholog 4 retrogenes
retro_fcat_1358, retro_fcat_1615, retro_fcat_1941, retro_fcat_371,
Homo sapiens ENSG00000167283 ortholog_one2many 5 retrogenes
retro_hsap_3029, retro_hsap_3110, retro_hsap_63, retro_hsap_860, retro_hsap_883,
Loxodonta africana ENSLAFG00000030274 ortholog_one2many 3 retrogenes
retro_lafr_1209, retro_lafr_135, retro_lafr_3,
Macropus eugenii ENSMEUG00000015281 ortholog_one2one 1 retrogene
retro_meug_1774,
Microcebus murinus ENSMICG00000015233 ortholog_one2one 6 retrogenes
retro_mmur_1428, retro_mmur_237, retro_mmur_365, retro_mmur_513, retro_mmur_700, retro_mmur_725,
Macaca mulatta ENSMMUG00000017604 ortholog_one2many 4 retrogenes
retro_mmul_1333, retro_mmul_22, retro_mmul_25, retro_mmul_262,
Mus musculus ENSMUSG00000038717 ortholog_one2many 1 retrogene
retro_mmus_139,
Nomascus leucogenys ENSNLEG00000007362 ortholog_one2many 6 retrogenes
retro_nleu_425, retro_nleu_608, retro_nleu_765, retro_nleu_81, retro_nleu_841, retro_nleu_846,
Oryctolagus cuniculus ENSOCUG00000029455 ortholog_one2one 4 retrogenes
retro_ocun_1140, retro_ocun_1156, retro_ocun_1418, retro_ocun_567,
Otolemur garnettii ENSOGAG00000016298 ortholog_one2many 10 retrogenes
retro_ogar_1097, retro_ogar_1102, retro_ogar_176, retro_ogar_3286, retro_ogar_3332, retro_ogar_352, retro_ogar_433, retro_ogar_444, retro_ogar_533, retro_ogar_573,
Pongo abelii ENSPPYG00000003933 ortholog_one2one 5 retrogenes
retro_pabe_1913, retro_pabe_2508, retro_pabe_2568, retro_pabe_2589, retro_pabe_688,
Pan troglodytes ENSPTRG00000004342 ortholog_one2one 5 retrogenes
retro_ptro_1518, retro_ptro_2043, retro_ptro_2102, retro_ptro_2478, retro_ptro_597,
Sus scrofa ENSSSCG00000023777 ortholog_one2one 5 retrogenes
retro_sscr_196, retro_sscr_270, retro_sscr_378, retro_sscr_463, retro_sscr_500,
Ictidomys tridecemlineatus ENSSTOG00000014400 ortholog_one2one 2 retrogenes
retro_itri_1649, retro_itri_332,
Tupaia belangeri ENSTBEG00000009999 ortholog_one2one 4 retrogenes
retro_tbel_1364, retro_tbel_4005, retro_tbel_857, retro_tbel_959,
Tarsius syrichta ENSTSYG00000002686 ortholog_one2one 4 retrogenes
retro_tsyr_1516, retro_tsyr_1688, retro_tsyr_2166, retro_tsyr_578,
Tursiops truncatus ENSTTRG00000004284 ortholog_one2one 9 retrogenes
retro_ttru_1088, retro_ttru_1125, retro_ttru_1255, retro_ttru_1537, retro_ttru_1781, retro_ttru_541, retro_ttru_716, retro_ttru_810, retro_ttru_972,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_660 72.12 100.00
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2. retro_rnor_698 70.87 100.00
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3. retro_rnor_1145 77.88 100.00
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4. retro_rnor_1160 84.47 100.00
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5. retro_rnor_1185 75.24 100.00
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6. retro_rnor_1319 77.88 100.00
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7. retro_rnor_1345 72.12 100.00
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8. retro_rnor_1379 78.64 100.00
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9. retro_rnor_1420 70.19 99.03
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10. retro_rnor_1468 74.26 94.17
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11. retro_rnor_1993 65.12 83.50
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12. retro_rnor_2258 79.81 100.00
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13. retro_rnor_2271 73.79 100.00
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14. retro_rnor_2404 81.73 100.00
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15. retro_rnor_2573 70.59 99.03
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16. retro_rnor_2650 84.16 98.06
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17. retro_rnor_2723 79.81 100.00
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18. retro_rnor_2735 68.48 86.41
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19. retro_rnor_2929 63.04 85.44
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Download FASTA sequences of all ENSRNOG00000028884 retrocopies