Parental gene:

Sdad1, ENSRNOG00000022229

Aliases:None
Description:None
Organism:Rat (Rattus norvegicus)
Coordinates:14:17163927..17190707(+)


>ENSRNOG00000022229
ATGTCCGGGAGGAACAACAACAAGCTGCCCAGCAACCTGCCGCAGTTACAGAACCTGATCAAGCGGGACCCGCCGGCCTA
TGTCGAGGAGTTCCTTCAGCAATATAATCACTATAAATCCAATATGGAGATTTTCAAGTTACAACCCAATAAACCCAGCA
AAGAACTCGCAGAGCTGGTGATGTTCATGGCACAGATTGGCCACTGCTACCCGGAGCATCTCAGTGAGTTCCCACAGGAG
CTGAAGGACCTGCTCTCCTACAACCACACTGTCCTAGACCCCGATCTCCGCATGACATTTTGCAAAGCGTTGATCTTACT
GAGAAATAAGAACCTCATCAATCCATCGGATCTGCTAGAGCTCTTCTTTGAGCTGCTGCGCTGCCGTGACAAGCTCCTGC
GGAAGACTCTGTACACACATATTGTGACTGACATCAAGAACATCAACGCCAAACACAAGAACAACAAGGTGAACGTGGTG
CTGCAGAACTTCATGTACACCATGCTGAGAGACAGCAATGCAACCGCAGCCAAGATGTCTTTGGATGTGATGATTGAACT
GTACAGAAGGAACATCTGGAACGATGCCAAAACTGTCAATGTTATTACAACCGCATGTTTCTCCAAGATCACCAAGATAT
TAGTTGCTGCTTTGACGTTCTTCCTCGGAAAAGATGAGGAAGAGAAGCAGGACAGTGACTCAGAGTCCGAGGACGACGGG
CCCACAGCAAGAGACCTGCTGGTGCAGTATGCCACGGGAAAGAAGGGCTCCAAAAACAAGAAGAAGCTGGAAAAGGCCAT
GAAAGTGCTGAAGAAACAAAAGAAGAAGAAGAAACCAGAAGTGTTTAACTTTTCAGCTATTCACTTGATTCATGATCCCC
AAGACTTTGCAGAGAAGCTTCTGAAGCAGCTGGAGAGCTGTAAGGAGAGGTTCGAAGTGAAGATGATGCTCATGAACCTC
ATCTCCAGATTGGTGGGCATTCACGAGCTTTTCCTCTTCAACTTCTACCCTTTCGTGCAAAGGTTCCTGCAGCCCCACCA
GAGAGAAGTCACGAAGATCCTTCTGTTTGCTGCACAAGCCTCTCATCACCTGGTGCCCCCAGAGATTATTCAGTCCTTGC
TCCTGACGGTGGCCAACAATTTTGTCACTGACAAGAACTCTGGGGAAGTCATGACCGTAGGAATCAATGCTATAAAAGAG
ATCACAGCACGATGTCCTCTGGCCATGACCGAAGAGCTTCTTCAGGACCTGGCTCAGTATAAGACACACAAAGACAAGAA
TGTAATGATGTCTGCCAGAACTCTGATCCATCTCTTCCGGACACTGAACCCTCAGATGCTGCAGAAGAAGTTCCGGGGCA
AACCCACCGAAGCCTCCATCGAAGCAAGGATACAAGAATATGGAGAACTAGATGCCAAGGACTACATCCCGGGAGCAGAG
GTTCTAGAGCTGGAGAAGGAGGAGAATACAGAAAACGATGAAGATGGATGGGAAAGTGCCAGCCTCAGTGAGGAGGAGGA
GGATGGCGAGTGGGTTGATGTGCACCACTCTTCTGACGAGGAACAGCAAGCAGTTGCCAAGAAGCTGGACAGCATGCCCA
TGGAGGAGCGGAAAGCCAAAGCCGCCGCCGTCAGCACCAGTCGGGTCTTAACGCAGGATGACTTCCAGAAAATCCGCATG
GCCCAGATGAAGAAGGAAATGGACGCTGCCCCGGGGAAAGCCCAGAAAAGGAAATACTTGGACATGGACAGTGACGAGGA
GTCCAGGGGGGAGTTGCTGTCTCTTCGGGACATTGAACGCCTTCATAAAAAGCCCAAGTCCGACAAGGAGACGAGACTAG
CAACCGCTATGGCTGGAAGGACAGACCGAAAGGAGTTTGTGAGGAAGAAAACCAAAATAAATCCATTTTCCAGTTCCACA
AATAAAGAGAAGAAAAAGCAGAAGAACTTCATGATGATGCGGTATAGCCAGAATGTCCGGTCAAAAACATCACGCTCCTT
CCGGGAGAAGCAGCTAGCACTGCGAGATGCACTTCTGAAAAAGAGGAAAAGAATGAAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 10 .64 RPM
SRP017611_kidney 11 .51 RPM
SRP017611_liver 5 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008521 ortholog_one2one 2 retrogenes
retro_cfam_1211, retro_cfam_515,
Cavia porcellus ENSCPOG00000008524 ortholog_one2one 2 retrogenes
retro_cpor_510, retro_cpor_994,
Echinops telfairi ENSETEG00000004811 ortholog_one2one 2 retrogenes
retro_etel_1946, retro_etel_779,
Homo sapiens ENSG00000198301 ortholog_one2one 2 retrogenes
retro_hsap_2412, retro_hsap_4030,
Gorilla gorilla ENSGGOG00000006441 ortholog_one2many 1 retrogene
retro_ggor_1498,
Loxodonta africana ENSLAFG00000012217 ortholog_one2many 1 retrogene
retro_lafr_980,
Microcebus murinus ENSMICG00000006682 ortholog_one2one 1 retrogene
retro_mmur_1204,
Macaca mulatta ENSMMUG00000017503 ortholog_one2many 1 retrogene
retro_mmul_604,
Nomascus leucogenys ENSNLEG00000027034 ortholog_one2many 1 retrogene
retro_nleu_2410,
Oryctolagus cuniculus ENSOCUG00000026953 ortholog_one2one 1 retrogene
retro_ocun_547,
Pongo abelii ENSPPYG00000014852 ortholog_one2one 1 retrogene
retro_pabe_1777,
Pan troglodytes ENSPTRG00000024399 ortholog_one2one 2 retrogenes
retro_ptro_1388, retro_ptro_2732,
Sus scrofa ENSSSCG00000008974 ortholog_one2one 1 retrogene
retro_sscr_571,
Tupaia belangeri ENSTBEG00000005270 ortholog_one2one 1 retrogene
retro_tbel_2414,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1381 80.72 72.30
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_rnor_1967 75.26 68.95
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSRNOG00000022229 retrocopies