Parental gene:

Fbl, ENSRNOG00000019229

Aliases:None
Description:rRNA 2'-O-methyltransferase fibrillarin [Source:UniProtKB/Swiss-Prot;Acc:P22509]
Organism:Rat (Rattus norvegicus)
Coordinates:1:86319814..86328915(+)


>ENSRNOG00000019229
ATGAAGCCAGGTTTCAGCCCCCGTGGGGGCGGCTTTGGTGGCAGAGGCGGCTTTGGTGACAGAGGTGGTAGAGGAGGAGG
CCGAGGAGGGAGAGGAGGTTTTGGCGGTGGACGAGGAGGCTTTGGCGGTGGAGGTCGAGGTCGAGGTGGAGGAGGCGGTG
GCTTCAGGGGACGAGGAGGTGGAGGTGGACGAGGTGGAGGCTTCCAGTCTGGGGGCGGCCGGGGTCGAGGTGGTGGCCGG
GGAGGCAAGAGAGGAAACCAGTCAGGGAAGAATGTGATGGTGGAGCCCCATCGGCATGAAGGAGTCTTTATCTGTCGCGG
AAAGGAGGATGCCCTTGTCACAAAGAATCTGGTTCCTGGAGAATCTGTGTATGGAGAGAAGAGAGTCTCTATCTCCGAAG
GAGATGACAAAATTGAGTACCGAGCCTGGAACCCCTTCCGCTCCAAGCTGGCCGCAGCAATCCTGGGTGGCGTAGACCAG
ATCCACATCAAGCCGGGGGCCAAGGTGCTCTACCTTGGGGCAGCCTCAGGCACCACCGTCTCCCACGTGTCTGACATTGT
TGGCCCGGATGGTCTGGTCTACGCAGTTGAGTTCTCCCACCGCTCTGGCCGTGACCTCATCAACTTGGCCAAGAAGAGGA
CCAACATTATTCCTGTAATTGAAGATGCTCGGCACCCACACAAATACCGCATGCTTATTGCAATGGTGGATGTCATCTTT
GCCGATGTGGCCCAGCCAGACCAAACCCGAATTGTGGCCCTGAATGCCCACACCTTCCTGCGGAATGGAGGACACTTTGT
GATTTCCATTAAGGCCAACTGCATTGACTCCACAGCCTCAGCAGAAGCTGTGTTTGCATCTGAAGTGAAAAAGATGCAGC
AAGAGAACATGAAGCCTCAGGAGCAGTTGACACTAGAGCCTTATGAACGAGACCACGCTGTGGTTGTAGGTGTGTACAGG
CCACCTCCCAAGGCGAAGAACTGA

Library Parental gene expression (RPM)
SRP017611_brain 17 .33 RPM
SRP017611_kidney 19 .68 RPM
SRP017611_liver 9 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002579 ortholog_one2many 1 retrogene
retro_btau_108,
Canis familiaris ENSCAFG00000005412 ortholog_one2many 1 retrogene
retro_cfam_1697,
Equus caballus ENSECAG00000023221 possible_ortholog 1 retrogene
retro_ecab_308,
Homo sapiens ENSG00000105202 ortholog_one2many 1 retrogene
retro_hsap_99,
Loxodonta africana ENSLAFG00000000171 possible_ortholog 1 retrogene
retro_lafr_23,
Macropus eugenii ENSMEUG00000014684 ortholog_one2many 1 retrogene
retro_meug_1077,
Microcebus murinus ENSMICG00000007686 ortholog_one2many 1 retrogene
retro_mmur_1127,
Mus musculus ENSMUSG00000046865 ortholog_one2many 4 retrogenes
retro_mmus_1141, retro_mmus_1585, retro_mmus_1609, retro_mmus_89,
Nomascus leucogenys ENSNLEG00000014234 ortholog_one2many 1 retrogene
retro_nleu_1947,
Otolemur garnettii ENSOGAG00000006463 ortholog_one2many 2 retrogenes
retro_ogar_3102, retro_ogar_504,
Pan troglodytes ENSPTRG00000010982 ortholog_one2many 2 retrogenes
retro_ptro_2208, retro_ptro_3074,
Pteropus vampyrus ENSPVAG00000010849 ortholog_one2many 1 retrogene
retro_pvam_231,
Sorex araneus ENSSARG00000008709 possible_ortholog 1 retrogene
retro_sara_768,
Sus scrofa ENSSSCG00000030510 ortholog_one2many 1 retrogene
retro_sscr_39,
Ictidomys tridecemlineatus ENSSTOG00000012486 possible_ortholog 1 retrogene
retro_itri_1302,
Tupaia belangeri ENSTBEG00000007755 ortholog_one2many 2 retrogenes
retro_tbel_3774, retro_tbel_3974,
Tursiops truncatus ENSTTRG00000003967 possible_ortholog 1 retrogene
retro_ttru_30,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_75 77.78 98.17
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2. retro_rnor_643 78.80 55.66
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3. retro_rnor_1082 66.86 50.76
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4. retro_rnor_1780 80.10 59.63
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Download FASTA sequences of all ENSRNOG00000019229 retrocopies