Parental gene:

Cdc42, ENSRNOG00000013536

Aliases:None
Description:Cell division control protein 42 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8CFN2]
Organism:Rat (Rattus norvegicus)
Coordinates:5:159447306..159485241(-)


>ENSRNOG00000013536
ATGCAGACAATTAAGTGTGTTGTTGTTGGTGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAA
ATTCCCGTCGGAGTATGTACCAACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATACACTCTTG
GACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGACTACGACCGTTAAGTTATCCACAGACAGATGTTTTTCTAGTA
TGTTTCTCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAA
GACTCCTTTCTTGCTTGTCGGGACCCAAATTGATCTCAGAGATGACCCTTCTACTATTGAGAAACTTGCCAAGAACAAAC
AGAAGCCTATTACTCCAGAGACTGCTGAAAAGCTGGCGCGGGATCTGAAGGCTGTCAAGTATGTGGAGTGTTCCGCCCTC
ACACAGAAAGGCCTAAAGAATGTGTTTGATGAAGCAATATTGGCTGCCTTGGAGCCTCCAGAACCGAAGAAGAGCCGCAG
GTGTGTGCTGCTATGA

Library Parental gene expression (RPM)
SRP017611_brain 120 .21 RPM
SRP017611_kidney 146 .40 RPM
SRP017611_liver 54 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014707 possible_ortholog 5 retrogenes
retro_cfam_1587, retro_cfam_1970, retro_cfam_2189, retro_cfam_88, retro_cfam_89,
Choloepus hoffmanni ENSCHOG00000005306 possible_ortholog 10 retrogenes
retro_chof_103, retro_chof_1044, retro_chof_1195, retro_chof_1853, retro_chof_2055, retro_chof_2105, retro_chof_2331, retro_chof_2407, retro_chof_50, retro_chof_800,
Callithrix jacchus ENSCJAG00000005912 possible_ortholog 6 retrogenes
retro_cjac_1275, retro_cjac_1808, retro_cjac_1826, retro_cjac_2251, retro_cjac_751, retro_cjac_911,
Cavia porcellus ENSCPOG00000006543 possible_ortholog 4 retrogenes
retro_cpor_1168, retro_cpor_286, retro_cpor_33, retro_cpor_887,
Equus caballus ENSECAG00000019180 possible_ortholog 1 retrogene
retro_ecab_11,
Echinops telfairi ENSETEG00000004443 possible_ortholog 1 retrogene
retro_etel_2010,
Felis catus ENSFCAG00000004853 ortholog_one2many 4 retrogenes
retro_fcat_129, retro_fcat_1421, retro_fcat_1579, retro_fcat_896,
Gorilla gorilla ENSGGOG00000024439 ortholog_one2one 5 retrogenes
retro_ggor_1932, retro_ggor_2057, retro_ggor_2303, retro_ggor_2593, retro_ggor_2695,
Macaca mulatta ENSMMUG00000022009 ortholog_one2one 8 retrogenes
retro_mmul_1449, retro_mmul_1612, retro_mmul_1685, retro_mmul_1900, retro_mmul_1932, retro_mmul_24, retro_mmul_349, retro_mmul_598,
Monodelphis domestica ENSMODG00000016078 ortholog_one2one 3 retrogenes
retro_mdom_18, retro_mdom_181, retro_mdom_537,
Mustela putorius furo ENSMPUG00000015999 possible_ortholog 2 retrogenes
retro_mputfur_308, retro_mputfur_957,
Mus musculus ENSMUSG00000006699 ortholog_one2one 3 retrogenes
retro_mmus_2816, retro_mmus_2995, retro_mmus_3170,
Oryctolagus cuniculus ENSOCUG00000009986 possible_ortholog 1 retrogene
retro_ocun_60,
Otolemur garnettii ENSOGAG00000014261 possible_ortholog 1 retrogene
retro_ogar_131,
Pongo abelii ENSPPYG00000001755 ortholog_one2one 6 retrogenes
retro_pabe_2240, retro_pabe_2461, retro_pabe_2801, retro_pabe_3215, retro_pabe_3239, retro_pabe_3295,
Rattus norvegicus ENSRNOG00000001068 other_paralog 1 retrogene
retro_rnor_230,
Rattus norvegicus ENSRNOG00000015415 within_species_paralog 1 retrogene
retro_rnor_473,
Sorex araneus ENSSARG00000005184 ortholog_one2one 3 retrogenes
retro_sara_10, retro_sara_220, retro_sara_3,
Ictidomys tridecemlineatus ENSSTOG00000000805 ortholog_one2one 4 retrogenes
retro_itri_1158, retro_itri_1602, retro_itri_1615, retro_itri_431,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2062 73.39 57.07
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Download FASTA sequences of all ENSRNOG00000013536 retrocopies