Parental gene: | Psmb3, ENSRNOG00000012938 |
| Aliases: | None |
| Description: | proteasome subunit beta type-3 [Source:RefSeq peptide;Acc:NP_058981] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 10:85437463..85444560(+) |
>ENSRNOG00000012938
ATGTCTGTTATGTCCTATAATGGAGGGGCCGTCATGGCCATGAAGGGAAAGAACTGTGTGGCCATCGCTGCAGACAGGCG
TTTCGGAATCCAGGCCCAAATGGTGACCACGGACTTCCAGAAGATCTTTCCCATGGGTGACAGGCTCTACATAGGCCTGG
CCGGCCTGGCCACTGACGTCCAGACAGTTGCCCAGCGTCTCAAGTTCCGACTGAACCTGTACGAGCTGAAGGAAGGACGG
CAGATCAAGCCTTACACCCTGATGAGCATGGTGGCCAACCTCTTGTATGAGAAACGGTTTGGTCCCTACTACACAGAACC
TGTCATTGCTGGCTTGGACCCGAAGACCTTTAAGCCCTTCATTTGCTCTCTGGACCTCATTGGCTGTCCCATGGTGACAG
ATGACTTCGTAGTCAGTGGCACCTGCTCTGAACAAATGTATGGGATGTGTGAGTCTCTCTGGGAGCCCAACATGGAGCCT
GAGCACCTGTTTGAGACCATTTCTACTCCCATGCTGAATGCTGTGGACAGGGATGCCGTGTCGGGCATGGGCGTCATTGT
CCACATCATTGAAAAAGACAAGATCACCACCAGGACACTGAAGGCGCGGATGGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 28 .61 RPM |
| SRP017611_kidney | 34 .61 RPM |
| SRP017611_liver | 30 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004363 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000016587 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000008246 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000000987 | possible_ortholog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000015275 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000014497 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000108294 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007067 | possible_ortholog | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000002233 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000004131 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000002997 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012363 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000012614 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000069744 | possible_ortholog | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000594 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000002598 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008505 | possible_ortholog | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002270 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014258 | possible_ortholog | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000013010 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_8 | 88.29 | 100.00 | Please wait, loading  |
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| 2. | retro_rnor_743 | 88.00 | 97.07 | Please wait, loading |
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| 3. | retro_rnor_1016 | 87.90 | 60.00 | Please wait, loading |
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| 4. | retro_rnor_2094 | 79.31 | 98.54 | Please wait, loading |
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| 5. | retro_rnor_2448 | 83.33 | 70.24 | Please wait, loading |
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| 6. | retro_rnor_2537 | 89.55 | 65.37 | Please wait, loading |
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| 7. | retro_rnor_2804 | 91.58 | 98.54 | Please wait, loading |
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Download FASTA sequences of all ENSRNOG00000012938 retrocopies