Parental gene:

Hnrnpa2b1, ENSRNOG00000011175

Aliases:Hnrnpa2b1, Hnrpa2, Hnrpa2b1, hnRNP
Description:heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001098083]
Organism:Rat (Rattus norvegicus)
Coordinates:4:145901253..145909847(-)


>ENSRNOG00000011175
CAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTT
AAGCTTTGAAACCACAGAAGAAAGTTTGAGAAACTACTACGAGCAATGGGGAAAGCTCACAGACTGTGTGGTTATGCGGG
ATCCTGCAAGCAAAAGATCAAGAGGATTTGGCTTTGTAACTTTCTCATCTATGGCTGAGGTTGATGCTGCCATGGCTGCA
AGGCCTCATTCCATTGATGGCAGGGTGGTTGAGCCAAAACGTGCTGTGGCAAGAGAGGAGTCTGGGAAACCAGGAGCCCA
TGTGACTGTGAAGAAACTGTTCGTTGGTGGAATTAAGGAAGATACTGAGGAGCATCACCTTAGAGATTACTTTGAAGAAT
ATGGAAAAATTGATACTATTGAAATAATTACTGATAGGCAGTCTGGAAAAAAAAGAGGCTTTGGCTTTGTTACCTTTGAT
GACCATGATCCTGTGGATAAGATTGTCTTGCAGAAATATCACACCATAAATGGTCACAATGCAGAAGTTAGAAAGGCATT
GTCTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGGAGTGGAAGAGGAGGAAACTTTGGTTTTGGAGATTCTCGAGGTG
GCGGTGGCAATTTTGGACCAGGACCAGGAAGCAACTTTAGGGGGGGTTCTGATGGATATGGAAGTGGACGTGGATTTGGG
GATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGG
ATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATT
ATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTT
GGTGGTAGCAGGAACATGGGAGGACCATATGGTGGAGGGAACTATGGTCCTGGAGGAAGTGGAGGAAGTGGGGGCTATGG
TGGAAGGAGCCGATATTGA

Library Parental gene expression (RPM)
SRP017611_brain 236 .54 RPM
SRP017611_kidney 315 .97 RPM
SRP017611_liver 165 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Callithrix jacchus ENSCJAG00000007908 ortholog_one2one 2 retrogenes
retro_cjac_2285, retro_cjac_3041,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 possible_ortholog 1 retrogene
retro_mluc_34,
Otolemur garnettii ENSOGAG00000015353 ortholog_one2one 3 retrogenes
retro_ogar_1384, retro_ogar_3077, retro_ogar_3189,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Rattus norvegicus ENSRNOG00000001556 other_paralog 11 retrogenes
retro_rnor_1510, retro_rnor_1665, retro_rnor_1869, retro_rnor_2053, retro_rnor_2659, retro_rnor_2669, retro_rnor_2713, retro_rnor_2776, retro_rnor_2809, retro_rnor_348, retro_rnor_959,
Rattus norvegicus ENSRNOG00000002270 within_species_paralog 1 retrogene
retro_rnor_1365,
Rattus norvegicus ENSRNOG00000036839 other_paralog 17 retrogenes
retro_rnor_1001, retro_rnor_1322, retro_rnor_1658, retro_rnor_1770, retro_rnor_1786, retro_rnor_1846, retro_rnor_1987, retro_rnor_2194, retro_rnor_2482, retro_rnor_2551, retro_rnor_2619, retro_rnor_2657, retro_rnor_2881, retro_rnor_2944, retro_rnor_2945, retro_rnor_2965, retro_rnor_2969,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1824 97.83 53.67
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2. retro_rnor_2043 83.98 71.02
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3. retro_rnor_2339 58.91 57.48
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Download FASTA sequences of all ENSRNOG00000011175 retrocopies