Parental gene:

HNRNPA2B1, ENSCJAG00000007908

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:29527080..29540686(+)


>ENSCJAG00000007908
ATGGAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAACTCTTTATTGGTGG
CTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAGCTTACAGATTGTGTGGTAATGA
GGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTCTCATCCATGGCTGAGGTTGATGCTGCCATGGCT
GCAAGACCTCATTCAATTGATGGGAGAGTTGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGC
TCACGTAACTGTGAAGAAGCTGTTTGTTGGTGGAATTAAGGAAGATACTGAGGAACATCACCTTAGAGATTACTTTGAGG
AATATGGAAAAATTGATACCATTGAAATAATTACCGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTT
GATGACCATGATCCTGTGGATAAAATCGTGTTGCAGAAATACCATACCATCAATGGTCATAATGCAGAAGTAAGAAAGGC
TTTGTCTAGACAAGAAATGCAGGAAGTTCAAAGTTCTAGGAGTGGAAGAGGAGGCAACTTTGGCTTTGGGGATTCTCGTG
GCGGCGGAGGAAATTTCGGACCAGGACCAGGAAGTAACTTTAGAGGAGGATCTGATGGATATGGCAGTGGACGTGGATTT
GGAGATGGCTACAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGG
AGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAA
ATTATGGCAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAAC
TTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTA
TGGTGGGAGGAGCCGATATTGA

Library Parental gene expression (RPM)
SRP051959_colon 127 .82 RPM
SRP051959_heart 138 .32 RPM
SRP051959_kidney 169 .99 RPM
SRP051959_liver 141 .68 RPM
SRP051959_lung 198 .28 RPM
SRP051959_lymph_node 274 .21 RPM
SRP051959_skeletal_muscle 132 .38 RPM
SRP051959_spleen 217 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Callithrix jacchus ENSCJAG00000015165 within_species_paralog 1 retrogene
retro_cjac_2796,
Callithrix jacchus ENSCJAG00000015197 within_species_paralog 1 retrogene
retro_cjac_2589,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 possible_ortholog 1 retrogene
retro_mluc_34,
Otolemur garnettii ENSOGAG00000015353 ortholog_one2one 3 retrogenes
retro_ogar_1384, retro_ogar_3077, retro_ogar_3189,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Rattus norvegicus ENSRNOG00000011175 ortholog_one2one 3 retrogenes
retro_rnor_1824, retro_rnor_2043, retro_rnor_2339,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2285 99.71 100.00
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2. retro_cjac_3041 90.22 80.35
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Download FASTA sequences of all ENSCJAG00000007908 retrocopies